Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26310 252 / 5e-84 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2) AT3G08740 66 / 2e-12 elongation factor P (EF-P) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030360 [exp] 465 / 5e-168 AT4G26310 281 / 1e-95 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004300 [exp] 263 / 3e-88 AT4G26310 249 / 3e-83 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2) Potri.016G136600 [exp] 70 / 4e-14 AT3G08740 322 / 1e-112 elongation factor P (EF-P) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01132 [flax] [poplar] EFP Elongation factor P (EF-P) OB domain CL0021 [flax] [poplar] OB PF09285 [flax] [poplar] Elong-fact-P_C Elongation factor P, C-terminal CL0107 [flax] [poplar] KOW PF08207 [flax] [poplar] EFP_N Elongation factor P (EF-P) KOW-like domain
Representative CDS sequence Show only first row Show all	>Lus10007884 pacid=23143191 polypeptide=Lus10007884 locus=Lus10007884.g ID=Lus10007884.BGIv1.0 annot-version=v1.0 ATGATGCGAGGTCTCCAACAACTATACAGTAGCCAGAGCTACAAGAGACTCCCTAAAGCGCTATTCTATGCTACCCGTGCTTCCTTTTCTACTTCTTTGC ATGCAGTGTTGAATGTTTTGTCCTCCCCAAGCTATCATAGCAACACCAATACTATAAGTTCCTTGAATCCATGGTCCTTGATTCAGCACCGTGGCGTTAA AGTGAATGCCATTCATGTTCTGTTCATGATCTGCTGCAGCTTTACTCCTCTTTTAATCAATTTCAGTGAATTACTGATGGAAGCTAGTGTTTCATTTTTA TACACGCATGTTACAGGGAGAATCTACCAGGTGGTAGACGTAGAACATAGGCAGCGAGGAAGAGGAGGTGCAATGATGCAGATTGAGATTCGTGATGTCG ACAATGGGTCAAAGCAAAACGCAAGGTTTGGCACTGAAGAGTCTGTTGAAAGGGTATTTGTTCAAGAAAAGCCATTCACTTGTTTGTATACAGAAGATAA AATGGCTTATTTGATGGACCCTGTGAATTTTGAACAACTGGAAGTGCCGTTGGAGCTATTTGGCAAGTCTGCTGCATATTTACAAGAGGACTTGAGAGTC AAATTGCAGCTATATGATGGTAGACCTTTATCAGGCTCTGTCCCAAAACAAGTGACCTGCTCCATTAAGGAAACACAGGCCAATATGAAGGGGGCGACAA TCACCCCTAGGTATGTAAAAGCGGTACTGGACAATGGTCTCAATGTTCAAGTACCGCCTTATTTAAATATCGGCGAAAAAGTGATATTCAACACCGAGGA TGATACATTTGTTAGCAGGTAG
AA sequence Show only first row Show all	>Lus10007884 pacid=23143191 polypeptide=Lus10007884 locus=Lus10007884.g ID=Lus10007884.BGIv1.0 annot-version=v1.0 MMRGLQQLYSSQSYKRLPKALFYATRASFSTSLHAVLNVLSSPSYHSNTNTISSLNPWSLIQHRGVKVNAIHVLFMICCSFTPLLINFSELLMEASVSFL YTHVTGRIYQVVDVEHRQRGRGGAMMQIEIRDVDNGSKQNARFGTEESVERVFVQEKPFTCLYTEDKMAYLMDPVNFEQLEVPLELFGKSAAYLQEDLRV KLQLYDGRPLSGSVPKQVTCSIKETQANMKGATITPRYVKAVLDNGLNVQVPPYLNIGEKVIFNTEDDTFVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	3.6	0.9295
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001922 [exp]	4.2	0.9098
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	5.7	0.9016
AT1G30140			unknown protein		Lus10024751 [exp]	7.1	0.9284
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	7.5	0.9134
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	9.9	0.9062
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	10.6	0.9052
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	13.0	0.9105
					Lus10024694 [exp]	13.3	0.8922
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10012410 [exp]	13.6	0.8865

Compare expression of checked genes

Lus10007884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.