Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41310 142 / 1e-42 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT3G57040 138 / 1e-40 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT1G59940 128 / 9e-37 ARR3 response regulator 3 (.1) AT3G56380 124 / 5e-36 ARR17 response regulator 17 (.1) AT2G40670 120 / 2e-34 ARR16 response regulator 16 (.1.2) AT1G10470 120 / 1e-33 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT1G74890 115 / 4e-32 ARR15 response regulator 15 (.1) AT1G19050 115 / 6e-32 ARR7 response regulator 7 (.1) AT5G62920 114 / 8e-32 ARR6 response regulator 6 (.1) AT3G48100 114 / 9e-32 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030359 [exp] 346 / 7e-123 AT2G41310 142 / 3e-42 RESPONSE REGULATOR 8, response regulator 3 (.1) Lus10029211 [exp] 134 / 5e-39 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 134 / 1e-38 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10030664 [exp] 131 / 2e-37 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10016334 [exp] 124 / 2e-35 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10004243 [exp] 122 / 8e-35 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10002750 [exp] 122 / 2e-34 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10039524 [exp] 119 / 1e-33 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10042153 [exp] 119 / 2e-33 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124806 [exp] 137 / 8e-41 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.016G038000 [exp] 137 / 3e-40 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.003G197466 [exp] 133 / 3e-39 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 134 / 4e-39 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.002G082200 [exp] 133 / 9e-39 AT3G57040 180 / 1e-56 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.001G027000 [exp] 132 / 9e-39 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.010G037800 [exp] 123 / 1e-34 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.019G058900 [exp] 119 / 4e-34 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.019G133600 [exp] 117 / 2e-33 AT3G56380 183 / 2e-60 response regulator 17 (.1) Potri.015G070000 [exp] 115 / 8e-32 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10007885 pacid=23143176 polypeptide=Lus10007885 locus=Lus10007885.g ID=Lus10007885.BGIv1.0 annot-version=v1.0 ATGGGGGAGGTGGAGGCAGAAGTGAAGCCGGAGGCGGTGGCAGAGGAGCAGATTGATGATGAACAATTGCCTACTATTCACGTCCTTGTGGTTGATGACT GCTTCCTTGACCGGAGAATTGTTTCCAAGCTCCTCCTCAAAGCTTCCTTTAAAGTGACCACTGTTGATAGTGGGAAGAAGGCCTTGGAGGTTTTAGGGAT TCATGCTGATGCTGATGGTACTGAAACAGTGGATACATCAAGCTCCATTCTTAATCAGGTGGAAAAGATTGATTTGATTCTCACTGACTTTTGCATGCCT GAGATGAATGGTCATGACCTTCTAGTGGCAGTCAAGGGCCACTCTGAAAAGAAGTCAACTCCTGTTGTTATCATGTCATCTGAGTACAATCCAGAGAGAA TAACCAGTTGTCTTGAGAGTGGTGTAGAAGAGTTTCTGCAGAAGCCTCTGAAGCTAAAGGACATGGAGAAATTGAGAAGTTACGTCAGAACAGAAACAGC CGCCTTGACAAGGCCGGGGACAAAGAGAAAAGCTGGCATGGAGTTAACCTCAGAGAACAATAATGCTTCAGAAAAGATGCCTCGTATGGCTGGAGTTGCC GTTGCCTGA
AA sequence Show only first row Show all	>Lus10007885 pacid=23143176 polypeptide=Lus10007885 locus=Lus10007885.g ID=Lus10007885.BGIv1.0 annot-version=v1.0 MGEVEAEVKPEAVAEEQIDDEQLPTIHVLVVDDCFLDRRIVSKLLLKASFKVTTVDSGKKALEVLGIHADADGTETVDTSSSILNQVEKIDLILTDFCMP EMNGHDLLVAVKGHSEKKSTPVVIMSSEYNPERITSCLESGVEEFLQKPLKLKDMEKLRSYVRTETAALTRPGTKRKAGMELTSENNNASEKMPRMAGVA VA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	0	1
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	1.0	0.9323
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	3.9	0.9000
AT4G01650			Polyketide cyclase / dehydrase...		Lus10007203 [exp]	7.5	0.8947
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	11.4	0.9033
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	12.4	0.8966
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	12.6	0.9064
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	12.7	0.9127
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	14.0	0.9152
AT1G45688			unknown protein		Lus10029743 [exp]	14.1	0.9218
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	14.2	0.9200

Compare expression of checked genes

Lus10007885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.