Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03100 229 / 2e-78 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030358 [exp] 284 / 5e-100 AT3G03100 263 / 1e-91 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051400 [exp] 224 / 6e-76 AT3G03100 269 / 1e-93 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2) Potri.003G122100 [exp] 41 / 9e-05 AT4G26965 217 / 1e-72 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05071 [flax] [poplar] NDUFA12 NADH ubiquinone oxidoreductase subunit NDUFA12
Representative CDS sequence Show only first row Show all	>Lus10007886 pacid=23143204 polypeptide=Lus10007886 locus=Lus10007886.g ID=Lus10007886.BGIv1.0 annot-version=v1.0 ATGGCAGCAGTGGTGAAAGGAGTGCTGAATTCTATTAAAGAGAAAGGGATCGGTGGCTTCTTACGCGAGGTGAGGTCAGAAGGCTACTTGCAAACCAAAA TCCACAACATAGGGGCAACAGTTGTTGGAGTTGACAAATTTGGCAACAAATACTATGAGAAACTGGGAGATACCCAATATGGGAGGCATCGCTGGGTTGA ATATGCAGAGAAGGGTCGATACAATGCTTCTCAGGTGCCACCAGAATGGCATGGTTGGCTTCATTTTATTACCGACCATACTGGAGATGAACTGCTCTTA TTTCAGCTATTGATGCTGAAGCCAAAGAGGTATGGCGTTGATCACAAGGAGAACGTGTCTGGACAGGGTTCAGACCAAATTTATCACTCTAAAGGGCATG CCCTCAATCCGTTGCAGAAGAACTGGACAAGGTACCAGTCCTGGGAACCGGCCAAGAAAGAGTAA
AA sequence Show only first row Show all	>Lus10007886 pacid=23143204 polypeptide=Lus10007886 locus=Lus10007886.g ID=Lus10007886.BGIv1.0 annot-version=v1.0 MAAVVKGVLNSIKEKGIGGFLREVRSEGYLQTKIHNIGATVVGVDKFGNKYYEKLGDTQYGRHRWVEYAEKGRYNASQVPPEWHGWLHFITDHTGDELLL FQLLMLKPKRYGVDHKENVSGQGSDQIYHSKGHALNPLQKNWTRYQSWEPAKKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10007886 [exp]	0	1
AT5G53650			unknown protein		Lus10032946 [exp]	2.8	0.8055
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	2.8	0.7951
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10021368 [exp]	7.4	0.7392
AT5G24165			unknown protein		Lus10014921 [exp]	11.4	0.7408
AT4G33740			unknown protein		Lus10012453 [exp]	11.4	0.7660
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	11.5	0.7557
AT2G44360			unknown protein		Lus10012711 [exp]	12.5	0.7611
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	13.5	0.7520
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013171 [exp]	13.8	0.6809
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	15.3	0.7313

Compare expression of checked genes

Lus10007886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.