Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59610 1229 / 0 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 1216 / 0 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT3G60190 226 / 2e-63 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 214 / 1e-59 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 211 / 2e-58 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 202 / 3e-55 ADL1B DYNAMIN-like 1B (.1) AT5G42080 198 / 6e-54 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT4G33650 67 / 4e-11 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 67 / 6e-11 DRP3B dynamin related protein (.1.2.3) AT1G60500 64 / 2e-10 DRP4C Dynamin related protein 4C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030357 [exp] 1612 / 0 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10007434 [exp] 1110 / 0 AT1G59610 1298 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10024461 [exp] 908 / 0 AT1G10290 1068 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Lus10019170 [exp] 217 / 2e-60 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 218 / 4e-60 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 212 / 9e-58 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10004007 [exp] 207 / 4e-57 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10024462 [exp] 183 / 2e-53 AT1G59610 217 / 1e-66 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10019506 [exp] 197 / 4e-53 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068700 [exp] 1306 / 0 AT1G59610 1262 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.003G001400 [exp] 1214 / 0 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Potri.004G228400 [exp] 1205 / 0 AT1G59610 1301 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.010G105900 [exp] 214 / 3e-59 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G135100 [exp] 213 / 7e-59 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 209 / 1e-57 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G171200 [exp] 208 / 2e-57 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.014G043600 [exp] 199 / 3e-54 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G090600 [exp] 189 / 1e-50 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 184 / 3e-49 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10007887 pacid=23143206 polypeptide=Lus10007887 locus=Lus10007887.g ID=Lus10007887.BGIv1.0 annot-version=v1.0 ATGGAGGCGATCGAGGAGCTCTCTCAGCTGTCTGACTCCATGAGGCAAGCTGCCTCATTACTTGCTGATGAGGACATTGACGACTCCGCCAGCTCTTCTA AACGCAGCTCTACTTTTCTCAACGTTGTTGCCCTGGGCACTGTTGGTGCTGGTAAATCTGCGGTCCTGAACAGTTTAATTGGCCATCCCGTTCTGCCTAC CGGTGAAAATGGAGCAACGAGGTCTCCTATAAGTATCGACTTACAGAGAGATGGCTCCGTAAGCAGCAGGTCAATTATCCTGCAAATTGACAACAAATCT CAACAGGTTTCTGCAAGTGCTTTGCGGCACTCATTGCAGGATAGACTGAGTAAGAGTGCTTCAGGGAAGAGTCGAGATGAGATTTATCTGAAGTTACGCA CAAGCACAGCTCCATCCTTGAAACTGATCGACTTACCTGGGTTAGATCAAAGGATTATGGATGAGTCAATGGTAAGTGATTATGCTGAGCGGAACGATGC GATTTTACTAGTCATTGTTCCTGCTGCCCAAGCCCCTGAAATTTCTTCTTCTCGAGCTCTCAGGATTGCTAAGGAATGTGATGGAGAAAGCACCAGAACT ATTGGAGTGATTAGTAAAATTGATCAAGCTGCTTCTGACCAGAAAGCCCTTGCAGCAGTCCAGGCTCTTCTGTTAAATCAAGGGCCGCCTAAAACTGCTG ATATCCAATGGGTGGCGCTGATAGGTCAGTCTGTATCAATAGCTTCTGCACAGTCTGGGTCTGAGAACTCCTTGGAGACTGCATGGAAGGCGGAGAGTGA GAGTCTGAAATCCATTCTGACTGGTGCACCCCAGAGTAAGCTGGGTAGAGTAGCTCTGGTGGATGCTCTGGCACAGCAGATTCGTAAGCGTATGAAAGTT CGGATTCCTAATCTCTTGTCTGGGTTACAGGGGAAATCTCAAATAGTTCAAGATGAACTAGTAAGGCTTGGGGAACAGATGGTTCAAAGTCCCGAGGGTA CTAAAGCTTTGGCATTGGAACTTTGTCGTGAATTCGAGGATCGATTTCTTCAACACGTTACAACTGGTGAGGGTTCTGGTTGGAAGATTGTTGCCAGCTT TGAGGGTAATTTTCCAAATAGGATGAAGCAACTCCCATTGGAAAGACATTTCGACATCCATAATGTTAAGCGGATTGTGTTGGAAGCTGATGGATATCAG CCATATCTTATATCACCAGAAAAGGGTTTGAGATCATTAATAAAAGGTGTTCTAGAACTTGCAAAAGAACCAGCACGCCTTTGCGTTGATGAGGTGCACC GAGTCTTGGTTGATATAGTCAATGCGTCTGCAAATTCCACACCTGGTTTAGGAAGGTATCCTCCTTTCAAAAGAGAGGTAGTCGCCATTGCTACTGCTGC ATTGGAAGTGTTCAAAACTGAAGCAAAGAAGATGGTGACTGCACTAGTTGATATGGAGCGGGCATTTGTGCCTCCCCAACATTTCATCCGTTTGGTGCAA AGGAGAATGGAGAGGCAGAGACGAGAAGAGGAACTCAAGAACAGGTCATCCAAGAAGGGGCATGATGCAGAACAAGCATTTATGAACAGGGCTACAAGTC CGCAGACAGATGGTCCAGGTGGGAGCTTGAAATCTTTGAAAGATAAATCCAGTCAATCAGATAAAGAAGGACAAGAAGGTTCTTTGAAAACTGCAGGGGC CGAAGGAGAAATAACAGCAGGTTTTCTTTTCAAGAGAAGTGTTAAAAAGGCAGATGGATGGACCAAGCGGTGGTTTGTTTTGAATGAGAAAACTGGAAAG CTAGGTTACACAAAAAAGCAGGAAGAGAGACACTTTCGTGGTGTGATCACGTTAGAGGAGTGCAACGTTGAAGAAGTTGTAGAGGAGGAGGAACCTCTCG CAAAGAGTTCAAAAGATAAAAAGGATAAAAAGGCCAATGGACCAGATCCTAAAGTGGCCAATCTCGTGTTCAAAATTACCAGCAAGGTTCCTTATAAAAC TGTCGTGAAAACCCGTGGTACACTTGTCTTGAAAGCTGAGAGTGTTGCTGATAAGGCTCAATGGATTAGCAAAATTTCTAAAATTGCTCAGATTACAAAG CCACAACCTAGAGGTGTTTCTCCTGAAGGTGGTCCGACCATGCGCCAAAGTCATTCTGATGGTTCTTTGGATTCAATGGTGCGTAGGCCTGCCGACCCTG AAGAGGAGCTTCGATGGATGTCCCAAGAAGTGCGTGGTTATGTTGAAGCAGTTTTAAACAGCTTGGCTGCTAATGTTCCCAAGGCAGTGGTTCTATGCCA AGTTGAGAAATCCAAGGAAGATATGCTCAATCAGCTATACAGCTCTGTCAGTGGTCAAAGCTCTGTAAGGATAGAAGAGTTACTTCAGGAGGACCATAAT GTAAAGCACAAGAGAGACCGATACCAGAAACAGTCGTCACTTCTATCAAAATTACCCCGCCAACTCAGCATTCATGACAATCGAGCCGCTGCCGCATCCA CCATGTCCAATGGCAGTACAGAAAGCAGCCCTCGGAGCAATGGGCCATCTTCAGGTGATGACTGGAGATCTGCATTTGATTCCGCTGCCAATGGGTCAGT GGATTATGGCCGATCTTCGTCAGCTGGTCGCAGTAGGCACTCCGGGGCTCAGAATGGTGATGTGAATTCAAGTGGGCGTCGCACCACTCCAAACCGGATG CCGCCAGCCCCGCCAGGTTCTTCCGGATATAGATTCTAA
AA sequence Show only first row Show all	>Lus10007887 pacid=23143206 polypeptide=Lus10007887 locus=Lus10007887.g ID=Lus10007887.BGIv1.0 annot-version=v1.0 MEAIEELSQLSDSMRQAASLLADEDIDDSASSSKRSSTFLNVVALGTVGAGKSAVLNSLIGHPVLPTGENGATRSPISIDLQRDGSVSSRSIILQIDNKS QQVSASALRHSLQDRLSKSASGKSRDEIYLKLRTSTAPSLKLIDLPGLDQRIMDESMVSDYAERNDAILLVIVPAAQAPEISSSRALRIAKECDGESTRT IGVISKIDQAASDQKALAAVQALLLNQGPPKTADIQWVALIGQSVSIASAQSGSENSLETAWKAESESLKSILTGAPQSKLGRVALVDALAQQIRKRMKV RIPNLLSGLQGKSQIVQDELVRLGEQMVQSPEGTKALALELCREFEDRFLQHVTTGEGSGWKIVASFEGNFPNRMKQLPLERHFDIHNVKRIVLEADGYQ PYLISPEKGLRSLIKGVLELAKEPARLCVDEVHRVLVDIVNASANSTPGLGRYPPFKREVVAIATAALEVFKTEAKKMVTALVDMERAFVPPQHFIRLVQ RRMERQRREEELKNRSSKKGHDAEQAFMNRATSPQTDGPGGSLKSLKDKSSQSDKEGQEGSLKTAGAEGEITAGFLFKRSVKKADGWTKRWFVLNEKTGK LGYTKKQEERHFRGVITLEECNVEEVVEEEEPLAKSSKDKKDKKANGPDPKVANLVFKITSKVPYKTVVKTRGTLVLKAESVADKAQWISKISKIAQITK PQPRGVSPEGGPTMRQSHSDGSLDSMVRRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSVSGQSSVRIEELLQEDHN VKHKRDRYQKQSSLLSKLPRQLSIHDNRAAAASTMSNGSTESSPRSNGPSSGDDWRSAFDSAANGSVDYGRSSSAGRSRHSGAQNGDVNSSGRRTTPNRM PPAPPGSSGYRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	1.0	0.9439
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	1.7	0.9374
AT4G24840			unknown protein		Lus10009908 [exp]	2.0	0.9377
AT5G54920			unknown protein		Lus10016477 [exp]	3.5	0.9058
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	3.7	0.8975
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	4.2	0.9029
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	4.5	0.9145
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027491 [exp]	4.9	0.9043
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	4.9	0.9161
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	6.0	0.8964

Compare expression of checked genes

Lus10007887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.