Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17860 161 / 5e-50 Kunitz family trypsin and protease inhibitor protein (.1) AT1G73260 121 / 3e-34 ATKTI1 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) AT1G73325 102 / 8e-27 Kunitz family trypsin and protease inhibitor protein (.1) AT1G73330 80 / 4e-18 ATDR4 drought-repressed 4 (.1) AT1G72290 46 / 4e-06 Kunitz family trypsin and protease inhibitor protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039163 [exp] 377 / 3e-134 AT1G17860 167 / 4e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013770 [exp] 376 / 3e-134 AT1G17860 166 / 6e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10007902 [exp] 371 / 3e-132 AT1G17860 162 / 3e-50 Kunitz family trypsin and protease inhibitor protein (.1) Lus10007890 [exp] 370 / 9e-132 AT1G17860 166 / 7e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10007892 [exp] 366 / 3e-130 AT1G17860 163 / 1e-50 Kunitz family trypsin and protease inhibitor protein (.1) Lus10030354 [exp] 366 / 5e-130 AT1G17860 160 / 1e-49 Kunitz family trypsin and protease inhibitor protein (.1) Lus10030355 [exp] 260 / 3e-88 AT1G17860 149 / 5e-45 Kunitz family trypsin and protease inhibitor protein (.1) Lus10042301 [exp] 255 / 2e-86 AT1G17860 182 / 2e-58 Kunitz family trypsin and protease inhibitor protein (.1) Lus10026357 [exp] 254 / 4e-86 AT1G17860 181 / 6e-58 Kunitz family trypsin and protease inhibitor protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G153400 [exp] 215 / 5e-71 AT1G17860 223 / 1e-74 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153466 [exp] 214 / 1e-70 AT1G17860 222 / 4e-74 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153600 [exp] 210 / 8e-69 AT1G17860 217 / 3e-72 Kunitz family trypsin and protease inhibitor protein (.1) Potri.004G067900 [exp] 194 / 2e-62 AT1G17860 183 / 2e-58 Kunitz family trypsin and protease inhibitor protein (.1) Potri.004G067600 [exp] 185 / 5e-59 AT1G17860 196 / 9e-64 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153200 [exp] 184 / 1e-58 AT1G17860 191 / 5e-62 Kunitz family trypsin and protease inhibitor protein (.1) Potri.004G067800 [exp] 150 / 1e-45 AT1G17860 137 / 8e-41 Kunitz family trypsin and protease inhibitor protein (.1) Potri.001G309900 [exp] 91 / 2e-22 AT1G17860 90 / 2e-22 Kunitz family trypsin and protease inhibitor protein (.1) Potri.019G006900 [exp] 88 / 3e-21 AT1G73260 79 / 6e-18 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.007G111800 [exp] 80 / 2e-18 AT1G73260 79 / 3e-18 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF00197 [flax] [poplar] Kunitz_legume Trypsin and protease inhibitor
Representative CDS sequence Show only first row Show all	>Lus10007889 pacid=23143233 polypeptide=Lus10007889 locus=Lus10007889.g ID=Lus10007889.BGIv1.0 annot-version=v1.0 ATGAATACATCAGCTGCCAATGCAATGCTACTAGTCGTCTTCTATTTCTCCATCACTCTCTCTTCCACCTCCGCCGCAAGATCCCTAGCCGAAACCATTG CCACGTCATCACTAACGCCACTACCCGTTCTAGACGTGGATGGAAAAGTGGTCCGGTCAGGGACCACTTACTACCTCCTGCCTGCAACTAGCGGGGAAGG TGGTGGTGTAGCCTTAGCCAGCACGACCAACGACCCGGAGAGCTGCCCGTTGGCTGTTGTCCAGGACGAGGACGAGATATCCCAAGGCCTCCCGCTCACG TTTTCCCCATTGAACACTAAGTCAGGCTACACTGTCCGCACATTCACGGACCTCAACGTTAAGTTCGCTGCAGATACGGCATGTGACGAAGGGACGGTGT GGAAAGTCGATGACTATGATGATGATGTCGAGCAGTGGTTTGTCGGGACGGGTGGGGTGGAAGGGAACCCGGGTCCAAGGACCGTGAAAAATTGGTTTAA GATTTGGAAGTATGGTTCGAACTATAAGTTTTCTTACTGTCCGGCAATATGCAAGTCGTGCAAGGTTGATTGCAAAGATGTTGGGATTTATGTGGACGAA AATGGTGGGAGGAAGTTGGCTCTGGTTAGCAAGGATGCTGACCCTTTTGTGGTCAAGTTCGTGAAGGCAACTTGA
AA sequence Show only first row Show all	>Lus10007889 pacid=23143233 polypeptide=Lus10007889 locus=Lus10007889.g ID=Lus10007889.BGIv1.0 annot-version=v1.0 MNTSAANAMLLVVFYFSITLSSTSAARSLAETIATSSLTPLPVLDVDGKVVRSGTTYYLLPATSGEGGGVALASTTNDPESCPLAVVQDEDEISQGLPLT FSPLNTKSGYTVRTFTDLNVKFAADTACDEGTVWKVDDYDDDVEQWFVGTGGVEGNPGPRTVKNWFKIWKYGSNYKFSYCPAICKSCKVDCKDVGIYVDE NGGRKLALVSKDADPFVVKFVKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17860			Kunitz family trypsin and prot...		Lus10007889 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015746 [exp]	1.0	0.9347
AT5G47550			Cystatin/monellin superfamily ...		Lus10039104 [exp]	4.9	0.9285
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	10.4	0.9238
AT5G05340			Peroxidase superfamily protein...		Lus10009937 [exp]	13.2	0.9228
AT1G17860			Kunitz family trypsin and prot...		Lus10039209 [exp]	19.8	0.9179
AT2G14095			unknown protein		Lus10001300 [exp]	29.2	0.9270
AT1G17860			Kunitz family trypsin and prot...		Lus10013730 [exp]	29.5	0.9209
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10024354 [exp]	38.2	0.8966
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	42.1	0.9146
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	46.6	0.9154

Compare expression of checked genes

Lus10007889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.