Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80210 239 / 1e-75 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT3G06820 238 / 6e-75 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2) AT5G23540 47 / 2e-05 Mov34/MPN/PAD-1 family protein (.1.2) AT1G22920 46 / 2e-05 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT1G71230 44 / 0.0001 CSN5B, AJH2 COP9-signalosome 5B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030352 [exp] 374 / 1e-129 AT1G80210 232 / 3e-74 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 47 / 1e-05 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10035470 [exp] 47 / 1e-05 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10026947 [exp] 47 / 2e-05 AT1G71230 597 / 0.0 COP9-signalosome 5B (.1) Lus10042663 [exp] 47 / 2e-05 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 47 / 2e-05 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10020149 [exp] 43 / 0.0003 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172800 [exp] 251 / 3e-79 AT1G80210 484 / 2e-170 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) Potri.006G275100 [exp] 48 / 5e-06 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.002G127900 [exp] 47 / 2e-05 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.018G006100 [exp] 46 / 2e-05 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.014G032900 [exp] 46 / 3e-05 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10007893 pacid=23143227 polypeptide=Lus10007893 locus=Lus10007893.g ID=Lus10007893.BGIv1.0 annot-version=v1.0 ATGTCCCTCACAAGCGTGAAGATGTCGGAGGACGTATGGCTGACATGTCTTACTCATGCCTTGTCCACCGAAACTGAGGAGATCATGGGCCTCCTCCTCG GCGATATTGAGTTTCTATCCATACTAACCCTGGAATGTCAGTACTTGAAAAATGGCAGAGTCAATGCACTAATCTGGGGAGCATCACCTCAATCGCGATC CGATCGACGAAAAGATCGAGTGGAGACAAATCCAGAGCAGTTGGCTGCTGCATCTGCTCAAGCTGAGATATCCTTAGTATTGATGTTAATTGTTTTACCA AATGACTTGCTAATGACTGCAAAAACGGGTAGAACAACGAGAGTCATTGGGTGGTACCATTCACATCCTCACATTACAGTGTTTCCTTCTCATGTTGATG TACGCACTCAGGCAATGTACCAACTTTTAGATCCTGGGTTTATTGGTTTGATTTTTTCTTGTTTCAGTGAAGACACAAATAAGGGCACGAGAAGACCTTT GGAGCTGGGTGATTTCTTTGCAAATGCTAATGCCAGTTACGCTGGAGGTGGGAGTACCAGATCGAGCATTCCAACCATCAATTTGGAAAATGCAGTTATT GATATAGACCCCATGGATATGTCAGATGGGATGCAAGAAGCTATGCATCGCTCAAATATGGACGTGAGTGGTGCAGAATATGTGAGAAAAGAAATTACTC TACAAGTGTTGCCCACCTTGCTTATGCTCAACCTTGATTCACCTTTAGTGTCATTGACTGATCTGCAACGTGTGCTATTTGAAGAGGAAAGAGGGGCATA TAATCAAGCCATATCCCAGAATGTTAGGAATGGAAGAGTACACCCGCTCGCCTTCATTCACCACACCTCGACATATCAAGCTTCCCTCTGCAAATTAATT GAGTACTGCTTGAGTCCTGCCATAAGTGCACTCCAGGATCGATTAAGAGAGAATGAAATCCGGTTATCATTGCTTGCGGAGGAAGCGATGTCTTTGGAGA AGGAGACGGCAGCACAGGTTGCTGAGGCAGGTAGCCATTCTCCTGTTCAGGTTGTTTCTTCTCCCAGAGGAACCACGTCACCTCGTCAGAGGGAATTGCA CAGTCCGTCTGGATCCCATAGTTCAAGAGGTTCAACTGGCTTCAGCAATCGACACCGAACAGGACCTTGA
AA sequence Show only first row Show all	>Lus10007893 pacid=23143227 polypeptide=Lus10007893 locus=Lus10007893.g ID=Lus10007893.BGIv1.0 annot-version=v1.0 MSLTSVKMSEDVWLTCLTHALSTETEEIMGLLLGDIEFLSILTLECQYLKNGRVNALIWGASPQSRSDRRKDRVETNPEQLAAASAQAEISLVLMLIVLP NDLLMTAKTGRTTRVIGWYHSHPHITVFPSHVDVRTQAMYQLLDPGFIGLIFSCFSEDTNKGTRRPLELGDFFANANASYAGGGSTRSSIPTINLENAVI DIDPMDMSDGMQEAMHRSNMDVSGAEYVRKEITLQVLPTLLMLNLDSPLVSLTDLQRVLFEEERGAYNQAISQNVRNGRVHPLAFIHHTSTYQASLCKLI EYCLSPAISALQDRLRENEIRLSLLAEEAMSLEKETAAQVAEAGSHSPVQVVSSPRGTTSPRQRELHSPSGSHSSRGSTGFSNRHRTGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10007893 [exp]	0	1
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	1.7	0.8222
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	10.6	0.7948
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	11.3	0.7676
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	14.4	0.7800
AT1G47570			RING/U-box superfamily protein...		Lus10020903 [exp]	17.3	0.7444
					Lus10034430 [exp]	18.5	0.7464
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	18.9	0.7390
AT1G75060			unknown protein		Lus10018805 [exp]	19.7	0.7420
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	20.9	0.7550
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	24.7	0.7511

Compare expression of checked genes

Lus10007893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.