Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15420 146 / 1e-42 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030351 [exp] 302 / 9e-104 AT1G15420 187 / 1e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G060900 [exp] 196 / 4e-61 AT1G15420 163 / 5e-48 unknown protein Potri.001G173300 [exp] 187 / 1e-57 AT1G15420 164 / 2e-48 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Lus10007894 pacid=23143210 polypeptide=Lus10007894 locus=Lus10007894.g ID=Lus10007894.BGIv1.0 annot-version=v1.0 ATGGGAGCGGAGACAGCAGCAGGAGGAGGAGCCGTTTCAATTGATAAAAAGAAATCGAAGAAGAAACGAGCAGCATCTCATTTGGATGATCAAGCAATTT CTGGATCTCATGAAGCAGTGGATGGAGTTCTTGTGGAAGATGATTTACTTGAGCCGACAATTGGCGAGAAACTTGCAAGTGTTGATATGCAAGATGGTAC AGCCAAACTCGGAGAGGCTCAAGAATTGTTACCTCATGGGAAGCTACCAAGTGCCGATTCAGTTAACGTTCTGCTTAAGCAAGCACTGCATGCTGATGAC CGCTCACTTCTGTTGGATTGCTTGTATACCAAAGATGAGAAGGTTATTGCCAATTCAGTATCCTCACTGAGTATGTCTGACGTCCTCCTGCTTCTACACT CTCTTGTAACTATAATTGAATCCAGGGGTGCAGTATTGGCATGTGCTCTTCCATGGTTAAGAAACCTGCTTCTTCTGCATGCAAGTGGAATAATGTCTCA GGAGTCTTCTCTACGTTCACTCAATTCTTTGAATCAGCTGATTGAATCTAGAGTGTCGACCTTCCAATCAGCTCTTCAGTTGTCAAGCTGCATAGACTTA CTATGTCCAGGGATTGCCGATGATGGAGAAGATGTTGAAACATCAGCTCCGTTTATTTATGTCGATGATGATGGTAGCGACGATGAATCTGAAAGTGATG ATGGTATGGAGACGGACGAAGAAATCAAACGGTATGACGGGCTAACTGACAGTGAAGGAGACATGGACGAGTAA
AA sequence Show only first row Show all	>Lus10007894 pacid=23143210 polypeptide=Lus10007894 locus=Lus10007894.g ID=Lus10007894.BGIv1.0 annot-version=v1.0 MGAETAAGGGAVSIDKKKSKKKRAASHLDDQAISGSHEAVDGVLVEDDLLEPTIGEKLASVDMQDGTAKLGEAQELLPHGKLPSADSVNVLLKQALHADD RSLLLDCLYTKDEKVIANSVSSLSMSDVLLLLHSLVTIIESRGAVLACALPWLRNLLLLHASGIMSQESSLRSLNSLNQLIESRVSTFQSALQLSSCIDL LCPGIADDGEDVETSAPFIYVDDDGSDDESESDDGMETDEEIKRYDGLTDSEGDMDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15420			unknown protein		Lus10007894 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10020836 [exp]	1.0	0.9181
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	1.7	0.8982
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	3.0	0.8759
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	4.2	0.8983
AT1G70350			unknown protein		Lus10013008 [exp]	5.9	0.8905
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	6.0	0.8917
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	6.3	0.8950
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10037359 [exp]	7.3	0.8235
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	7.5	0.8691
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	8.7	0.8483

Compare expression of checked genes

Lus10007894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.