Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10110 121 / 2e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G18510 50 / 1e-07 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49760 39 / 0.0007 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030350 [exp] 245 / 2e-83 AT4G10110 146 / 2e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041728 [exp] 55 / 3e-09 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024024 [exp] 53 / 8e-09 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016174 [exp] 40 / 0.0006 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10029372 [exp] 39 / 0.0007 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069000 [exp] 126 / 5e-37 AT4G10110 187 / 8e-61 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 57 / 9e-10 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G125300 [exp] 54 / 4e-09 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G025400 [exp] 40 / 0.0006 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 39 / 0.001 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10007895 pacid=23143193 polypeptide=Lus10007895 locus=Lus10007895.g ID=Lus10007895.BGIv1.0 annot-version=v1.0 ATGTCTCGATCCGTCTACATTGGGAATCTGGACGAGAGGGTGAGTAATAGGGTTCTGTATGATATTCTAATTCAAGCTGGACGAGTGGTGGACTTGCACA TTCCTCGCGACAGAGAAACTGATAGACCTAAAGGTTACGCATTTGCAGAGTACGAATCTGAGGAGGTTGCTGAATATGCTGTCAAGCTGTTTTCCGGCCT TGTTACTCTTTACAACCGAACTCTGAGATTTAAGATCTCTGGGCAAGACAAGCCTCCGCATAATCTTTCCAACGAATTCTCATCTAACAAATCAAGGTCT AATGGGGGGCCAGGTAATGGCGAGTTTGCTCGGCCTTCCCTTAGGACGCCAGCATTTGGATCAAGTTATTCTTTAAACCAAGTTTCCCCTGCCATAACGA CCTATCCTAATGGACATGGTTCCCATCACAATGGTAATGATAACAGTCGAAGAATGTATGGGTCTTCCTATGATAATGTTAGAGGGTCTAGGTTGCGACT CTAA
AA sequence Show only first row Show all	>Lus10007895 pacid=23143193 polypeptide=Lus10007895 locus=Lus10007895.g ID=Lus10007895.BGIv1.0 annot-version=v1.0 MSRSVYIGNLDERVSNRVLYDILIQAGRVVDLHIPRDRETDRPKGYAFAEYESEEVAEYAVKLFSGLVTLYNRTLRFKISGQDKPPHNLSNEFSSNKSRS NGGPGNGEFARPSLRTPAFGSSYSLNQVSPAITTYPNGHGSHHNGNDNSRRMYGSSYDNVRGSRLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10007895 [exp]	0	1
AT1G28410			unknown protein		Lus10015403 [exp]	13.2	0.8357
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	14.0	0.8526
AT4G32930			unknown protein		Lus10005503 [exp]	21.0	0.8354
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	22.7	0.8382
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	26.5	0.8219
AT5G64180			unknown protein		Lus10008120 [exp]	27.7	0.8062
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	30.6	0.7953
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	32.1	0.8258
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	35.2	0.8196
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	37.5	0.8139

Compare expression of checked genes

Lus10007895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.