Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29490 142 / 6e-42 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29480 142 / 8e-42 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29420 141 / 1e-41 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT1G59700 137 / 6e-40 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT3G09270 135 / 3e-39 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29450 134 / 5e-39 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT1G59670 134 / 1e-38 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT2G29440 132 / 2e-38 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G78340 129 / 8e-37 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT2G29460 129 / 8e-37 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021102 [exp] 173 / 6e-54 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10040727 [exp] 167 / 2e-51 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10007897 [exp] 166 / 2e-51 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016467 [exp] 160 / 6e-49 AT2G29420 207 / 2e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10001491 [exp] 157 / 7e-48 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10041654 [exp] 153 / 5e-46 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021103 [exp] 152 / 6e-46 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10035241 [exp] 151 / 1e-45 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 151 / 3e-45 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023200 [exp] 179 / 2e-56 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 174 / 2e-54 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 167 / 7e-52 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.006G024200 [exp] 163 / 3e-50 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 156 / 2e-47 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 155 / 3e-47 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 154 / 1e-46 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.010G061800 [exp] 154 / 1e-46 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G070900 [exp] 154 / 1e-46 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 152 / 4e-46 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007896 pacid=23143195 polypeptide=Lus10007896 locus=Lus10007896.g ID=Lus10007896.BGIv1.0 annot-version=v1.0 ATGGAAGGGGAGGAGGAGGTTAAGCTACTGATGACAAGCCTGAGTCCCTTTGCGACCAGAGTTGTTTGGGCTCTAAAGCTCAAAGGTGTTGAGTTTGAAG CAATAGAAGAAGACCTCTCCGAGAAAAGCTCATCACTTGTTCAATACAATCCAATCCACAAGAAAATCCCAGTTCTTGTTCATAACGGAGAGCCCGTCCT CGAGTCACTCATCATCCTTGAGTACATTGACAGTGTTTGGAACCAAACATGCCCTTTGCTCCCTGCTGATCCTTACCAGCGAGCCCTGACGCGATTCTGG TCTAAATTTGTCGACGAAAAGGTTGTGGAATCGATGTGGAGTGCGATGAAGCTGAAAGGGAAAGAAGGGGAAGAAGCCGCAGTGGAGGAAGCTCGTCGAA ACCTCAAGCATTTCGAGAAGGAACTAGAAACATCATCAGGAGTAGGAGGGAACAAGTTCTTTGGTGGGGACAAGATTGGAATGTTGGACCTAAGCTTAGG TTGTGTTGTGCTGTTGGTTGATGTAGTGGAGCAAGTGAGAGGAGATGATGAGAAATTGATTGATGAGGTTAACTTACCATTGCTGGCCAAATGGAAAAAG GGACTGTCTGAAATTCAAGCGATAAGGAACAACTTGCCTACCGTTGACCAAGTCGCCGCCGCCATCCAAGCCCGACAAGCTGCTGATTAA
AA sequence Show only first row Show all	>Lus10007896 pacid=23143195 polypeptide=Lus10007896 locus=Lus10007896.g ID=Lus10007896.BGIv1.0 annot-version=v1.0 MEGEEEVKLLMTSLSPFATRVVWALKLKGVEFEAIEEDLSEKSSSLVQYNPIHKKIPVLVHNGEPVLESLIILEYIDSVWNQTCPLLPADPYQRALTRFW SKFVDEKVVESMWSAMKLKGKEGEEAAVEEARRNLKHFEKELETSSGVGGNKFFGGDKIGMLDLSLGCVVLLVDVVEQVRGDDEKLIDEVNLPLLAKWKK GLSEIQAIRNNLPTVDQVAAAIQARQAAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	0	1
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10042791 [exp]	4.7	0.8782
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	5.3	0.8709
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	5.6	0.9190
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	6.1	0.8427
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006917 [exp]	8.0	0.9186
					Lus10025503 [exp]	11.0	0.8767
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	11.4	0.9064
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	12.0	0.8997
AT3G14880			unknown protein		Lus10039196 [exp]	14.8	0.8984
					Lus10040397 [exp]	17.1	0.8975

Compare expression of checked genes

Lus10007896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.