Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 187 / 1e-59 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 187 / 2e-59 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT1G59700 169 / 1e-52 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT2G29480 167 / 6e-52 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT5G62480 168 / 7e-52 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT1G74590 167 / 2e-51 ATGSTU10 glutathione S-transferase TAU 10 (.1) AT2G29450 166 / 3e-51 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT1G59670 165 / 5e-51 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT1G10370 165 / 5e-51 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT2G29460 164 / 9e-51 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001491 [exp] 282 / 4e-97 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10041654 [exp] 274 / 2e-93 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 206 / 4e-67 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 201 / 5e-65 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10007896 [exp] 190 / 2e-60 AT2G29490 171 / 2e-53 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Lus10040761 [exp] 189 / 4e-60 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 187 / 1e-59 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040727 [exp] 183 / 9e-58 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 182 / 2e-57 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G072400 [exp] 263 / 2e-89 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.016G023200 [exp] 256 / 9e-87 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 250 / 2e-84 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 247 / 5e-83 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G070900 [exp] 211 / 9e-69 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.012G052200 [exp] 202 / 1e-65 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 201 / 5e-65 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.015G042000 [exp] 199 / 3e-64 AT2G29460 197 / 7e-64 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) Potri.008G175100 [exp] 194 / 2e-62 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 193 / 1e-61 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007897 pacid=23143216 polypeptide=Lus10007897 locus=Lus10007897.g ID=Lus10007897.BGIv1.0 annot-version=v1.0 ATGGCCGCAATAAAAGAAGAAGTGAAGCTGTTGAAGACATGGTCCAGCCCATTCGTCCTGAGGGTCACTTGGGCACTCAACCTCAAAGGCATCCCTTTCC AATCCTTGGAAGAAGACCTCCACAACAAGAGTCATCTACTCCTCAAATACAATCCTGTCCACAAGAAAGTCCCTCTTCTCCTCCACAACGGGAGACCCAT CTCCGAATCCCTCGTCATCCTCGAATACATCGAAGAGACCTGGACCCACAACCTGCCGAACCTCATGCCTCAACACCCCGCCCAGCGAGCCTATACCCGC TTTTGGGCTAGATTCGGAGATGACAAGGTGGGTGAGTCAATGTGGGAAGCTTTCATAAAGGAAGGAAAAGAGAAAGAGCAAGGTCTTGCTGCAACTGCAG AAAACTTGAAGTTACTTGACTCTGAGCTAAAGGGAAAGAAATTCTTCGGAGGTGAAGATATCGGAATTGCTGACTTATCACTGGGTTGGCTGGTTAGCTT TGTACCAGTCTTTGAAGAAATTCTGGGTTTGAAATTAGCTGACAAGGAACACTATCCATTGTTATGGGAATGGAACCAGAGGATGTTGCATCAACCTGTC ATCAAAGACTCCTTGCCACCACATGACAAACTCGCCGCCGAATTACGTACCATACGCCAAAGATGCCTTTCTGGTGCAGCTGCTAGCCAGTAA
AA sequence Show only first row Show all	>Lus10007897 pacid=23143216 polypeptide=Lus10007897 locus=Lus10007897.g ID=Lus10007897.BGIv1.0 annot-version=v1.0 MAAIKEEVKLLKTWSSPFVLRVTWALNLKGIPFQSLEEDLHNKSHLLLKYNPVHKKVPLLLHNGRPISESLVILEYIEETWTHNLPNLMPQHPAQRAYTR FWARFGDDKVGESMWEAFIKEGKEKEQGLAATAENLKLLDSELKGKKFFGGEDIGIADLSLGWLVSFVPVFEEILGLKLADKEHYPLLWEWNQRMLHQPV IKDSLPPHDKLAAELRTIRQRCLSGAAASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10007897 [exp]	0	1
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	14.2	0.9101
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	32.2	0.8823
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	36.9	0.8808
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	45.7	0.8788
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10040861 [exp]	50.7	0.8633
AT3G19990			unknown protein		Lus10010154 [exp]	78.6	0.8714
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10007974 [exp]	88.0	0.8568
AT1G34270			Exostosin family protein (.1)		Lus10033734 [exp]	98.3	0.8149
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10014036 [exp]	98.7	0.8587
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10011445 [exp]	99.8	0.8554

Compare expression of checked genes

Lus10007897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.