Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05590 713 / 0 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) AT3G55260 224 / 6e-66 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G65590 211 / 5e-61 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030348 [exp] 1085 / 0 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10003292 [exp] 213 / 4e-61 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10030323 [exp] 209 / 9e-60 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10022251 [exp] 121 / 8e-29 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232800 [exp] 759 / 0 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.001G232600 [exp] 745 / 0 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.010G211000 [exp] 215 / 1e-62 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.008G079400 [exp] 211 / 3e-61 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.008G049801 [exp] 45 / 1e-05 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0546 [flax] [poplar] Hexosaminidase PF02838 [flax] [poplar] Glyco_hydro_20b Glycosyl hydrolase family 20, domain 2 CL0058 [flax] [poplar] Glyco_hydro_tim PF00728 [flax] [poplar] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10007899 pacid=23143198 polypeptide=Lus10007899 locus=Lus10007899.g ID=Lus10007899.BGIv1.0 annot-version=v1.0 ATGGCTTCCCAGACTTTGACCATTTTCTTCCTCCTCCTCTTCCTTACCTTCCGATCAACCTCCTCCTTACCGGTCAACGTCTGGCCAAAACCCACCTCCT TATCCTGGTCATCCCCGCACACAATCACCACCCTCTCCAACACTTTCCAGATCACTTTCCCCTCATCCAACACCTACCTCTCCGCCGCCGTCTCCCGCTA CCACACGCTCCTCCTCCCCGAGTCCCACGCCCCCATAGTCGACCCCATCCTCTCCCGCAAAATCTCCGCCCAGTCCTCCACCCAACTCCACACCTTGTCC ATCTCCGTCGCCGACCTAACCGCGCCTCTTATCCACGGCGTCGACGAGTCCTACGCCCTGTCCATCCCTTCCTCCTCCTCCTCCTCAGCCGCAGCCAATC TAACCGCCGCCACGGTGTGGGGGGCGATGAGGGGGCTGGAGACGTTCTCGCAGCTGGTGTGGGGCCGGCAGAGGCGCGTGCCGTTGGGGGTGGAGGTGAG AGACGCGCCGCTGTTTCCGCACAGGGGATTGCTGCTGGACACGGCGAGGAATTTCTACCCGGTTGAGGATATACTGAGGACGATCGCGGCGTTGAGCTAT AATAAGATGAATGTGTTCCACTGGCACATCACTGATTCGCACTCTTTCCCGCTGGAGCTACCGTCGGAGCCCGATCTGGCGGCCAAAGGATCGTATGGTC ACGGGATGAGGTATTCGGTTGGGGATGTGGCCCGGATTGTCCAGTTCGGGTACGAGCATGGTGTCCGGGTTATACCCGAGATCGACGCTCCTGCTCATAC GGGTTCCTGGGCGGCAGCATACCCAGACATAGTGACATGCGCAAACATGTTCTGGTGGCCAGCCGGCAGCACGTGGGAAGACCGGTTAGCATCCGAGCCA GGAACCGGCCAACTCAACCCGCTCAACCCGAAAACATACCAAGTGGTCAACAACGTCATAAACGACATCGTCTCCCTCTTCCCGGAACCATTCCTCCACG CCGGAGCCGACGAGGTGGTCCCCGCTTGCTGGAAAACCGACCCGTCGATCCAATCCTACCTCTCCCAGGAAACCAACCACACCTTAAGCCAAATCCTCGA AACGTTCGTGAAAAACACGCACCCAAACATCGTCTCCCACAACAGAACCGCCGTCTACTACGAAGACGTCTTGCTAAACCCCAACATAAAAGTCAACCCG TCAATTTTCCCGCCGTCGCAGACCATATTTCAAACGTGGAACAACGGTCCCAACAACACCAAGCTGCTCGCCGCGGCCGGGTACCGGGTCATAGTCTCGT CGTGGGAGTTTTACTATTTGGACTGTGGCCACGGCGACTTCTTGGGGAATGATAGTAAGTACGACCCTCCTGCCACGTCGTCGGACGTGGATAGTAACGG AGGGTCGTGGTGCGGGCCGTTTAAGACGTGGCAGAAGGTGTATAACTATGATATTACGTACGGGTTGAGCGAGGAGGAGAAGAGGTTGGTGATTGGCGGG GAGGTGGCGTTGTGGTCGGAGCAGATGGATGGGACGGTCGTGGACGGGAAGCTGTGGCCGAGGACGTCGGCGATGGCGGAGGCGATGTGGTCGGGGAATG TGGATGAGAAGGGGAGGAAGAGGTATGGGGAGGCTACGGATAGGATGAATGAGTGGAGGTATCGGTTGGTTGGGAGAGGGATTATGGCTGAGCCTATTCA GCCTTTGTGGTGTGTTAAGAACCCTGGCATGTGTAACACTGTTCATGACTCGCTTGATACTTAA
AA sequence Show only first row Show all	>Lus10007899 pacid=23143198 polypeptide=Lus10007899 locus=Lus10007899.g ID=Lus10007899.BGIv1.0 annot-version=v1.0 MASQTLTIFFLLLFLTFRSTSSLPVNVWPKPTSLSWSSPHTITTLSNTFQITFPSSNTYLSAAVSRYHTLLLPESHAPIVDPILSRKISAQSSTQLHTLS ISVADLTAPLIHGVDESYALSIPSSSSSSAAANLTAATVWGAMRGLETFSQLVWGRQRRVPLGVEVRDAPLFPHRGLLLDTARNFYPVEDILRTIAALSY NKMNVFHWHITDSHSFPLELPSEPDLAAKGSYGHGMRYSVGDVARIVQFGYEHGVRVIPEIDAPAHTGSWAAAYPDIVTCANMFWWPAGSTWEDRLASEP GTGQLNPLNPKTYQVVNNVINDIVSLFPEPFLHAGADEVVPACWKTDPSIQSYLSQETNHTLSQILETFVKNTHPNIVSHNRTAVYYEDVLLNPNIKVNP SIFPPSQTIFQTWNNGPNNTKLLAAAGYRVIVSSWEFYYLDCGHGDFLGNDSKYDPPATSSDVDSNGGSWCGPFKTWQKVYNYDITYGLSEEEKRLVIGG EVALWSEQMDGTVVDGKLWPRTSAMAEAMWSGNVDEKGRKRYGEATDRMNEWRYRLVGRGIMAEPIQPLWCVKNPGMCNTVHDSLDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10007899 [exp]	0	1
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	6.7	0.9187
					Lus10003802 [exp]	12.1	0.9166
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	16.5	0.9155
					Lus10003603 [exp]	17.0	0.9107
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	19.4	0.9157
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	22.9	0.9018
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10004760 [exp]	23.0	0.8529
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	26.6	0.9144
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	28.2	0.9150
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	30.7	0.8442

Compare expression of checked genes

Lus10007899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.