Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 417 / 2e-143 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT5G01930 407 / 3e-139 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT3G10890 394 / 2e-134 Glycosyl hydrolase superfamily protein (.1) AT3G10900 384 / 1e-130 Glycosyl hydrolase superfamily protein (.1) AT1G02310 362 / 3e-122 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT2G20680 350 / 5e-117 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 341 / 2e-113 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 268 / 2e-86 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030347 [exp] 821 / 0 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 417 / 3e-143 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 412 / 7e-141 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 417 / 9e-140 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 405 / 7e-139 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 404 / 5e-133 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 346 / 2e-115 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 345 / 3e-115 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 345 / 6e-115 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022000 [exp] 434 / 4e-150 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 429 / 4e-148 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 424 / 6e-146 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 416 / 6e-143 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 411 / 3e-140 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 412 / 6e-140 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 366 / 2e-124 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 352 / 3e-117 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 345 / 6e-115 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 192 / 1e-58 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10007900 pacid=23143235 polypeptide=Lus10007900 locus=Lus10007900.g ID=Lus10007900.BGIv1.0 annot-version=v1.0 ATGGCAACCTTCTTCTTCTTCACAAAAACTTCCATTAACGTCACCAATCTTCTTCTTCTTCTTCTTCTCTTGATCATTTGCAACGTTAATAACGCCGTTA GTTATGACTTATTTCCGGACCCTTTCAATATCACCATAACTTCATTTCTACCATCGTCTCCTTCATTCTTACCTCCTGCTTATTCTTCTTCTTCATCAAC ACCGCCGCCCGCGCCGCCGCAATCATCATCATCATCATCGCCGGTAGTAGTTTCATCGGTGCCGCCGTTGTTTATCGAGGCGAAAAATGGTCAATTCTTG CTGAACGGCTATCCATTTCTGTTCAATGGGTTCAACTCATACTGGATGATGACGGTGGCTGCACAGAGTGACCAACGACATAAAGTTACCGATGTATTTG AACAGGCCAAGGCCACCGGCCTGACCGTCTGCCGGACGTGGGCGTTCAGCGACGGATCGGCCCCTCAATCTCTTCAAATGGCTCCCGGCGTTTACAATGA GCAAGTTTTTCAGGCGCTGGATTTCGTGATATCAGAAGCAAGAAAGAACGGGATACGCTTAATCCTGACACTAACAAACAACTACAAGGACTATGGAGGA AGGCCTCAGTACGTTTCCTGGGCAAGATCCGTCGGCGTTCCGGTCACCACCGACGACGATTTCTACACTCATCCTGTCCTGAAATGGTACTACAAGAACC ATCTCACTAGAGTACTAACCAGGATCAATACCTTCACCGGCTTCTCTTACAAAGACGATCCGACCATCATGGCGTGGGAGCTGATGAATGAGCCCCGTTG TGAGGCTGATCACTCCGGCGATACCGTCACTAGATGGGTTCAAGAGATGGCATCGTACGTGAAATCAATCGACAGTAAGCACTTGTTGGCAGTAGGAATG GAAGGTTTCTACGGCGAATCAACCCCAGAAAAGCAGCGGTTCAACCCTGGTTACCGAGTGGGAACCGATTTCATCACCAGCAACCTTATCCAAGAAATCG ATTTCGCCACCATCCACGCCTACCCTGACGCATGGCTGATAGGTAGGAGTCGATACGAGCAGACAGTGTTCATGCAAGGGTGGATAACGAGCCATGTGGC CGATTCGAGGACGATACTGAGGAAGCCATTGGTGTTTGCCGAGTTTGGGTTGTCCAAGAAGAACACAGGGTACAGCATCATAGGGAGGGACGTGTTTCTG AGTGCTATCTACGGGAGCATCTTCAGTTCTGCTAGATTCGGTGGAGGTATGGCTGGTGGATTGGTTTGGCAAGTGTTGGCCGAAGGGATGGAGTCGTACG ATGATGGATATGAGATCGTTCTGTCACAGTCTCCGTCAACTTGCTTCGTCATTGCTCTGCAATCCAGGAGAATGACTGCTCTTCAACATGTTCTGCCCAA GGCTTGA
AA sequence Show only first row Show all	>Lus10007900 pacid=23143235 polypeptide=Lus10007900 locus=Lus10007900.g ID=Lus10007900.BGIv1.0 annot-version=v1.0 MATFFFFTKTSINVTNLLLLLLLLIICNVNNAVSYDLFPDPFNITITSFLPSSPSFLPPAYSSSSSTPPPAPPQSSSSSSPVVVSSVPPLFIEAKNGQFL LNGYPFLFNGFNSYWMMTVAAQSDQRHKVTDVFEQAKATGLTVCRTWAFSDGSAPQSLQMAPGVYNEQVFQALDFVISEARKNGIRLILTLTNNYKDYGG RPQYVSWARSVGVPVTTDDDFYTHPVLKWYYKNHLTRVLTRINTFTGFSYKDDPTIMAWELMNEPRCEADHSGDTVTRWVQEMASYVKSIDSKHLLAVGM EGFYGESTPEKQRFNPGYRVGTDFITSNLIQEIDFATIHAYPDAWLIGRSRYEQTVFMQGWITSHVADSRTILRKPLVFAEFGLSKKNTGYSIIGRDVFL SAIYGSIFSSARFGGGMAGGLVWQVLAEGMESYDDGYEIVLSQSPSTCFVIALQSRRMTALQHVLPKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007900 [exp]	0	1
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	14.1	0.8810
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	14.9	0.8763
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	17.8	0.8790
AT2G46150			Late embryogenesis abundant (L...		Lus10007904 [exp]	19.7	0.8719
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	25.8	0.8760
AT1G01800			NAD(P)-binding Rossmann-fold s...		Lus10006895 [exp]	27.3	0.8327
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	28.7	0.8682
AT4G15630			Uncharacterised protein family...		Lus10033971 [exp]	35.3	0.8683
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	43.0	0.8643
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	49.8	0.8552

Compare expression of checked genes

Lus10007900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.