Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22870 853 / 0 Protein kinase family protein with ARM repeat domain (.1) AT1G71410 833 / 0 ARM repeat superfamily protein (.1) AT2G40730 70 / 6e-12 CTEXP cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) AT3G20860 49 / 2e-05 ATNEK5 NIMA-related kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030346 [exp] 1263 / 0 AT1G22870 915 / 0.0 Protein kinase family protein with ARM repeat domain (.1) Lus10042632 [exp] 47 / 6e-05 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10040499 [exp] 45 / 0.0003 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 44 / 0.0007 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098700 [exp] 944 / 0 AT1G71410 1177 / 0.0 ARM repeat superfamily protein (.1) Potri.001G018700 [exp] 48 / 2e-05 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.002G049400 [exp] 46 / 0.0001 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.003G205400 [exp] 45 / 0.0003 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 45 / 0.0003 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 43 / 0.001 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007901 pacid=23143168 polypeptide=Lus10007901 locus=Lus10007901.g ID=Lus10007901.BGIv1.0 annot-version=v1.0 ATGTCGCTGAATATGAAAACTCTAACCCAAGCGCTGGCCAAGACGGCGGCGGTGATCGAGAAGACCGTCCAGACGACCGTGCAGGAAGTGACGGGTCCTA AGCCGTTGCAGGATTATGAGCTCATCGACCAGATTGGCTCCGCGGGGCCCGGTCTAGCCTGGAAATTGTACTCAGCCAGGCCGGTACGAGACTCCGCGAA GTCGCATCATTACCCCGTGGTGTGCGAAATGGGGCTGTTGGAGGTGAAGCATGGGTTGCTCCAAGTCGCAGAAACTTTGGACTTTCTCCATAACAATGCT CATCTAATCCACCGAGCCATAGCTCCCGAGGCAAGTTCTTACTGTCTGCTTGCAAAGTATTTGCTTGGAGCATGGAAACTTGGTGGATTTTGTTTTACAA TTCCAATAGACCAAGCTGGCAATTTAGCTAGTTCTCAGGCCTTCCATTATGCTGAATATGATGTAGAAGATTCCTTCATGCCTCTGCAGCCATCTTTAAA TTACACAGCACCTGAACTTGTTCGCAGCAAGGTCCCTTCTGCTGGAAGTGCATCAGACATTTTCAGCTTTGGATGCCTCGCATTCCACTTGATTGCTCAT AAGCCTTTGTTTGATTGCCACAATAATGTTAAGATGTACATGAATACTTTGAATTACTTGTCCAGTGAGACATTCTCTTCCATTCCTACGGAACTAGTTC CTGACTTGCAGAGGATGCTCTCTGCAAATGAGTCTCTCAGACCGACTGCCATTGATTTCACAGGTTCTGGATTTTTTCGTAATGACACGAGGTTGCGTGC TCTTCGCTTCCTGGACCACATGCTTGAGAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCACTATCAGATATGTGGAAAGATTTCGACTCACGTGTA TTGCGGTACAAGGTACTTCCACCTTTATGTGCAGAACTCAGGAATGTAGTTATGCAACCGATGATTCTCCCCATGGTTCTCACCATAGCCAAATCACAGG ATAAAGTAGATTTCGAGCTTTCAACACTCCCAGCTCTTGTTCCTGTTCTGACCACGGCTGCTGGTGAGACATTGCTTCTTCTTGTCAAACATGCAGATCT CATTATTAACAAGGCTAGTCAGGAGACTTTGGTATCCAGTGTCTTGCACATGCTGGTTCGAGCTTATGATGATACTGATCCACGCATTCAGGAGGAAGTT CTGAGAAAATCTGTGCCTCTTGCCAAGCAACTTGATCCACAGCTCGTGAAACAAGCAATTTTGCCTCGAGTCCATGGATTAGCTCTTAAAACTACTGTTG CTGCGGTGAGAGTGAGTGCTCTGCTGTGCTTTGTAGATTTTGCCCAGACGCTGGACAAACATGCTGTTCTGGAGATGTTGCAAACAATCCAGCGGTGTAC AACAGTAGACCGTTCTGCTCCTACCCTTATGTGTACTCTTGGAGTTGCAAATTCAATTCTTAAACAGTTTGGCGTAGAGTTTGTTGCGGAGCATGTTCTT CCTCTTCTTTCACCTCTGCTCACTGCCCAACAGCTAAATGTGCAACAGTTTGCCAAATACATGCTGTTCGTGAAGGATGTACTAAGGATGATAGAAGAAA AACGAGGGGTTACAGTAAGTGATTCCGGAATTCCGGAGACGAAGAGTTTACCTTATGTCAATGGGATTCAATCGCAAGCACCAAACAAAGCAACTGGGAA TGTTGCTCCTGTAGTAAGAAATGGTTCATCATGGGATGAAGATTGGGGTCCTGTCAACAAGGGCCCTGCCCCTGCAAAGCAGCCTGCTATGACCAACTCA TTGCCACTTTCCTCTGCTTCAAACAATTCATCGGCCGTTCCTACTATGATTTCTGGTAGCCAGCAGCCTCTTCAATCATTGTCTTCTCTGTCAACAACTT CCAGTATTTCTTCCTTGTCCAGTCAGCAACCAGCTATGTCCTCCTGCACTCCAGTGGACATAGAATGGCCTCCTAGGGCGTCTTCTGCTGTAAACTCTCA ACTAAACGACAGTGGGAAACAATTGAATACGGGATCACCATCCACACCAGCTATTGATGACATGGATCCTTTTGCTAATTGGCCACCAAGATCTAGCAGC ACCGCCAGTAGCTCCAACTCTTTGAATAATGGCAAGGTTGGATCACTCACTCCAAATTATGGCTCTAGCTTGATGACAAGCCGATCCAGCACCATCCAGA CCAATGGTGGCAACAGCTGGGCATTTAACAACCAGAATTCAGCTACCAATTCTACTGCTGGAAATACAGGGGGAGCTCTGTACAGCAGTGGACTGAATAA TACCACCAACTCCCTCGGTTTCATGAAAAGCAATCATGGAAGTATGGTTTCTTCGAATGAAAAGAAGTCTGCAGCTCTGGAATCTATATTTGGTTCAGGC AGGAACGATCATATCGCTCCAAGGCTTGCTCCCCCTCCTTCGGCAGCTGTGGGAATGGGAAGAGGGAGAGGGAGAGGGGGCAGCTCAGCCTTGAAGCCTG CTCAGTCGAAAACGCAGGCTGGACAGCCACCTATCTTGGACTTACTATGA
AA sequence Show only first row Show all	>Lus10007901 pacid=23143168 polypeptide=Lus10007901 locus=Lus10007901.g ID=Lus10007901.BGIv1.0 annot-version=v1.0 MSLNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYELIDQIGSAGPGLAWKLYSARPVRDSAKSHHYPVVCEMGLLEVKHGLLQVAETLDFLHNNA HLIHRAIAPEASSYCLLAKYLLGAWKLGGFCFTIPIDQAGNLASSQAFHYAEYDVEDSFMPLQPSLNYTAPELVRSKVPSAGSASDIFSFGCLAFHLIAH KPLFDCHNNVKMYMNTLNYLSSETFSSIPTELVPDLQRMLSANESLRPTAIDFTGSGFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRV LRYKVLPPLCAELRNVVMQPMILPMVLTIAKSQDKVDFELSTLPALVPVLTTAAGETLLLLVKHADLIINKASQETLVSSVLHMLVRAYDDTDPRIQEEV LRKSVPLAKQLDPQLVKQAILPRVHGLALKTTVAAVRVSALLCFVDFAQTLDKHAVLEMLQTIQRCTTVDRSAPTLMCTLGVANSILKQFGVEFVAEHVL PLLSPLLTAQQLNVQQFAKYMLFVKDVLRMIEEKRGVTVSDSGIPETKSLPYVNGIQSQAPNKATGNVAPVVRNGSSWDEDWGPVNKGPAPAKQPAMTNS LPLSSASNNSSAVPTMISGSQQPLQSLSSLSTTSSISSLSSQQPAMSSCTPVDIEWPPRASSAVNSQLNDSGKQLNTGSPSTPAIDDMDPFANWPPRSSS TASSSNSLNNGKVGSLTPNYGSSLMTSRSSTIQTNGGNSWAFNNQNSATNSTAGNTGGALYSSGLNNTTNSLGFMKSNHGSMVSSNEKKSAALESIFGSG RNDHIAPRLAPPPSAAVGMGRGRGRGGSSALKPAQSKTQAGQPPILDLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	0	1
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	5.8	0.8896
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	6.9	0.8278
AT1G46912			F-box associated ubiquitinatio...		Lus10003349 [exp]	7.8	0.7777
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	9.1	0.8850
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	11.0	0.8430
AT5G40450			unknown protein		Lus10022266 [exp]	12.0	0.8220
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	13.4	0.8269
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	15.7	0.8483
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	17.0	0.7961
AT4G24840			unknown protein		Lus10024203 [exp]	18.5	0.7583

Compare expression of checked genes

Lus10007901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.