Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46150 135 / 2e-39 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G54200 73 / 1e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23610 66 / 8e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 56 / 1e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 45 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 44 / 3e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036403 [exp] 295 / 2e-102 AT2G46150 156 / 8e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10017531 [exp] 82 / 4e-19 AT2G46150 98 / 5e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 72 / 5e-15 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 69 / 6e-14 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 61 / 2e-11 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 61 / 3e-11 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 61 / 3e-11 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 60 / 9e-11 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 58 / 4e-10 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165100 [exp] 154 / 1e-46 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 112 / 1e-30 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 108 / 4e-29 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 85 / 3e-20 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 78 / 8e-18 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 76 / 5e-17 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 70 / 1e-14 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 70 / 2e-14 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 62 / 8e-12 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 45 / 6e-06 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10007904 pacid=23143215 polypeptide=Lus10007904 locus=Lus10007904.g ID=Lus10007904.BGIv1.0 annot-version=v1.0 ATGGACAAGAGCGATCAAACACGGCCACTAGCACATATCTCCGGCGTCAACCGCCACGTCAGCGACGAAGAATCCGCCGCCTTTGCCGCGACCGATTCCG AAACCAACGGACTACCCGGCGGCAACCACAAATGTATCAAATGCTGCGGCTGCTTCTCCGCCGGGTTCCTCCTCCTCGCCGCCGTCCTCCTCATCCTATC CCTCACCGTTTTCCACGTCAGGGACCCAATCATCCGGGTCGACGGAATCTCCGTCAGCCGCCAGCTGGCCTCGTCGTCCAACGTGTCTTTGGTGGCTCTC GTCACGGTGAAGAATCCAAACGCGGGGTCGTTCAGGTACGGAAACACCACCACCGCGGTGTACTATCGTGGGGTGGGCGTTGGGGAGGCGCGTGGGCTTC CGGGAAGCGTGGGCGCTAGGCGGACTGTGAGGATGAACGTGACGGTCGAAGTTTCGGCGGGTCGGGTCGTGGAGAGCCCCGATTTCGAGGCGGATTTCGG GTCAGGGGTTTTGGCCCTGGAGACGTGGTCCAGGATTCCCGGAAGGACGACGGTGATGGGAATCGTGAAGAGCCACGTCACGATTGAGCTGAACTGCAGC GTTTCGGTCGACGTTTCGAACTGGTCGTTTCGGAGCCAGAAATGCAGGCACAAGTTCCAATTTTAG
AA sequence Show only first row Show all	>Lus10007904 pacid=23143215 polypeptide=Lus10007904 locus=Lus10007904.g ID=Lus10007904.BGIv1.0 annot-version=v1.0 MDKSDQTRPLAHISGVNRHVSDEESAAFAATDSETNGLPGGNHKCIKCCGCFSAGFLLLAAVLLILSLTVFHVRDPIIRVDGISVSRQLASSSNVSLVAL VTVKNPNAGSFRYGNTTTAVYYRGVGVGEARGLPGSVGARRTVRMNVTVEVSAGRVVESPDFEADFGSGVLALETWSRIPGRTTVMGIVKSHVTIELNCS VSVDVSNWSFRSQKCRHKFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10007904 [exp]	0	1
AT1G19530			unknown protein		Lus10002540 [exp]	9.6	0.9324
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	10.6	0.9309
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	12.0	0.9208
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	12.8	0.9216
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	13.4	0.9305
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	15.9	0.9250
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007900 [exp]	19.7	0.8719
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	20.8	0.9127
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	23.9	0.9184
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	26.5	0.9103

Compare expression of checked genes

Lus10007904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.