Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64000 169 / 8e-53 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT5G41570 167 / 1e-52 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT2G46130 165 / 2e-52 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G13080 138 / 2e-41 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 120 / 1e-34 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT2G44745 118 / 6e-33 WRKY WRKY12 WRKY family transcription factor (.1) AT1G69310 115 / 6e-31 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT1G29860 112 / 4e-30 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G49520 114 / 8e-30 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G18170 112 / 8e-30 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036401 [exp] 216 / 4e-71 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10012547 [exp] 141 / 6e-43 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10041546 [exp] 137 / 2e-40 AT5G13080 171 / 1e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10003128 [exp] 135 / 3e-40 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 135 / 3e-40 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10017067 [exp] 120 / 3e-32 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 117 / 4e-31 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 113 / 4e-30 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 111 / 2e-29 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090700 [exp] 187 / 3e-60 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G164900 [exp] 186 / 6e-60 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.017G066860 [exp] 144 / 2e-43 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G058800 [exp] 143 / 3e-43 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 140 / 3e-42 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G328000 [exp] 140 / 5e-42 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 136 / 2e-40 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G138900 [exp] 123 / 4e-35 AT2G44745 224 / 9e-75 WRKY family transcription factor (.1) Potri.014G050000 [exp] 123 / 1e-34 AT2G44745 224 / 5e-74 WRKY family transcription factor (.1) Potri.008G103300 [exp] 120 / 2e-32 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10007906 pacid=23143171 polypeptide=Lus10007906 locus=Lus10007906.g ID=Lus10007906.BGIv1.0 annot-version=v1.0 ATGGAACGCCATGAACCGCCGCCACCATCCACCGGAGAACAACCACCGCCAGCTTATAATAATAATAATCAAAACCCTCCTCCCGATCCGATGCTATACG AATCAAACCCGCTTCTGCAAATTCCCTTCTCCTCTGCCAGCTCATCACTGATGCCGTCCCTGCCAGAGATCGATTGGGTTAGCCTTCTGTCCGGCGGAGG ACAGTTGATGCAGATGGGAAACAGTGGCATGATTAACGGCGCCGGTGGTTATAATAACGAAGGGAATAATAATTATTATAGTACTAGCACTGATCATAAT AAGGATACGAAGAAAGGTAGTGGCGGCGGCGGCGGAGCTCATCGGAGAAAAGCGGCGGTGAGGCCGAGGTTTGCTTTCCAGACGAGGAGCGAGGACGACA TTCTGGATGACGGTTACCGTTGGAGAAAGTACGGCCAGAAGGCGGTTAAAAACAGCGCTTTTCCCAGGAGTTACTACAGGTGCACGCACCACACATGCAG CGTGAAGAAGCAAGTACAGAGGCTATCAAAGGACACGAGCATAGTTGTCACCACTTACGAAGGTATCCACAACCATCCTTGCGAGAAGCTCATGGAGACC CTCACCCCTCTCCTCAAGCAGATGCAGTTCCTCACAGCCGCCGCTGCCGCAGCCGCCTCCCGATTCTAA
AA sequence Show only first row Show all	>Lus10007906 pacid=23143171 polypeptide=Lus10007906 locus=Lus10007906.g ID=Lus10007906.BGIv1.0 annot-version=v1.0 MERHEPPPPSTGEQPPPAYNNNNQNPPPDPMLYESNPLLQIPFSSASSSLMPSLPEIDWVSLLSGGGQLMQMGNSGMINGAGGYNNEGNNNYYSTSTDHN KDTKKGSGGGGGAHRRKAAVRPRFAFQTRSEDDILDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCSVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMET LTPLLKQMQFLTAAAAAAASRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	0	1
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	1.4	0.9718
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	2.6	0.9740
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	4.2	0.9668
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	4.9	0.9622
AT4G02830			unknown protein		Lus10042573 [exp]	5.5	0.9608
					Lus10018643 [exp]	6.9	0.9595
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10030306 [exp]	7.0	0.9580
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	7.7	0.9511
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10026252 [exp]	8.1	0.8988
AT1G24405			unknown protein		Lus10036923 [exp]	8.5	0.9564

Compare expression of checked genes

Lus10007906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.