Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12370 1266 / 0 SEC10 exocyst complex component sec10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036398 [exp] 1511 / 0 AT5G12370 1255 / 0.0 exocyst complex component sec10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090100 [exp] 1380 / 0 AT5G12370 1286 / 0.0 exocyst complex component sec10 (.1.2.3) Potri.002G164100 [exp] 1359 / 0 AT5G12370 1301 / 0.0 exocyst complex component sec10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0294 [flax] [poplar] Sec10 PF07393 [flax] [poplar] Sec10 Exocyst complex component Sec10
Representative CDS sequence Show only first row Show all	>Lus10007908 pacid=23143212 polypeptide=Lus10007908 locus=Lus10007908.g ID=Lus10007908.BGIv1.0 annot-version=v1.0 ATGAAAGAGGGCAAGGAAGGAAGCCGGGGTCATAGAGCTACCAAGTCTGCAACTGGTGGCTCTTCTGCGCTCATTCTTGATGTGGAAGACTTTAAGGGCG ATTTTTCGTTTGATGCATTATTTGGGGGACTGGTCAACAATTTACTCCCAGATTTTCAAGAGGATGATGTGGATTCAGCAGAAGGACACGGTGATGGCAT GTCAAATGGGCATGTAAGAGCCCCATCTGATGCATCAAAATTTTCACAAGTGGTGTCTTCCCCTTTATTTCCTGAAGTAGATGCTCTCTTGGCTCTCTTC AGGGATTCTTGTAAAGAGTTGATTGACCTCCGAAAGCAGACTGATGGAAAGCTCAACAATCTCAAAAAGGAAGTCTCTGTCCAAGACTTAAAGCACAGGA AGACAATTGCCGAGCTTGAAAAAGGCGTAGATGGTTTGTTTAGCAGCTTTGCACGATTGGATTCACGTATTTCAAGTGTTGGACAAACTGCTGCCAAGAT TGGAGATCATTTACAAAGTGCTGATGCTCAGAGAGAGACTGCCAGCCAGACTATAGAACTTATAAAGTACCTGATGGAGTTCAATAGCAGCCCAGGAGAC TTAATGGAACTCTCGCCTTTATTTTCGGACGATACCCGTGTCGCAGAAGCAGCTTCAATTGCTCAGAAATTGAGGTCATTTGCTGAAGAAGATATTGGAA GACAAGGAATTTCTGCACCATCTGTTGTGGGGAATGCTACAGCTAGCCGTGGATTGGAAGTTGCAGTTGCTAATCTTCAGGATTACTGTAACGAACTCGA GAACAGGCTGTTGTCTAAGTTTGATGCTGCTTCACAGAGAAGAGAACTGTCTACCATGGCAGAATGTGCCAAAATTTTGTCGCAGTTTAACAGAGGCACC AGTGCCATGCAACATTATGTTGCAACACGTCCAATGTTCATTGATGTGGAAGTTATGAATGCGGACACGAGATTGGTCCTAGGTGATCAGGGTTCACAAC CTAGTCCCAACAATGTTGCCCGTGGTCTTTCTTCCTTGTACAAAGAAATCACAGATACGGTGCGCAAAGAAGCTGCTACAATTATGGCGGTATTCCCTTC TCCTAATGATGTCATGTCAATTTTGGTTCAGAGAGTTTTGGAGCAACGGGTTACTGCTCTTTTGGACAAATTGCTGGTGAAGCCATCTCTAGGGAACTTG CCTTCTATTAAAGACGGTGGACTTTTGCCATACCTCAGGATGCTAGCAGTAGCATATGAGAAAACGCAAGAGCTGGCTAGAGATCTGCGTGCTGTTGGAT GTGGTGACTTGGATGTTGAGGGATTGACAGAGTCTTTGTTTTCTTCTCACAAGGATGAGTATCCTGAACACGAAAAGGCATCTCTTAACCAACTTTATCA AGGAAAGATGGAGGAATTGCGTTCTGAAAGCCAGGTATCTGAGGGGAGTGGGACTATTGGACGTTCAAAAGGAGCCTCAGTTGCATCTTCACACCAGCAG ATATCTGTTACTGTTGTGACAGAATTTGTTAGGTGGAATGAGGAAGCAATTTCAAGATGTGCTGTCTTTTCATCCCAGCCAGCGACCCTTGCTGCTAATG TAAAAGAAGTGTTCACATGCTTGCTTGGCCAAGTAAGCCAATATATAACAGAAGGACTTGAGCGTGCAAGAGATGGACTCATAGAAGCGGCAGCGTTGAG GGAAAGGTTTGTGCTGGGCACAAACCTTAGTAGGAGGGTGGCTGCAGCTGCAGCTTCCGCCGCAGAAGCTGCTGCAGCTGCTGGGGAGAGCAGTTTCAGA TCTTTCATGGTTGCTGTCCAACGTTGTGGTAGCAGTGTTGCTATAGTTCAGCAGTATTTTGCAAACTCAATATCCCGGCTCTTGCTGCCCGTGGATGGTG CACATGCTTCTTCTTGTGAAGAAATGGCAACAGCTATGTCAAGTGCAGAGGCTGCTGCTTACAAGGGGCTTCAACAGTGTATTGAGACAGTAATGGCAGA GGTTGAGCGTTTGCTTTCAGCTGAGCAAAAGGCGACTGATTATCGATCACCTGATGATGGTATGATTCCCGATCATCGTCCAACAACTGCGTGCACGAGA GTGGTGGCATACCTGTCACGCATCCTTGAGTCTGCATTCACTGCGTTGGAGGGTCAAAACAAACAAGCCTTCTTGACTGAATTGGGCAATTGTTTACATA AAGGACTGGTTACTCACTGGCAGAAGTTCACTTTCAATCCAAGTGGAGGCCTGCGGCTGAAACGTGATATAACAGAGTATGGCGAATTCCTGCGCAGTTT TAATGCTCCCACGGTTGATGAAAAGTTCGAATTATTGGGCATAATGGCGAATGTATTTATTGTGGCGCCTGAAAGTCTCTCTAGTTTGTTTGAGGGTACT CCGAGTATCCGAAAAGATGCCCAAAGGTTTATCCAGCTTAGAGACGACTACAAGAGCGCCAAACTCGCATCGAAGCTCAGCGCCTTGTGGGCCAGCTCTG GTTGA
AA sequence Show only first row Show all	>Lus10007908 pacid=23143212 polypeptide=Lus10007908 locus=Lus10007908.g ID=Lus10007908.BGIv1.0 annot-version=v1.0 MKEGKEGSRGHRATKSATGGSSALILDVEDFKGDFSFDALFGGLVNNLLPDFQEDDVDSAEGHGDGMSNGHVRAPSDASKFSQVVSSPLFPEVDALLALF RDSCKELIDLRKQTDGKLNNLKKEVSVQDLKHRKTIAELEKGVDGLFSSFARLDSRISSVGQTAAKIGDHLQSADAQRETASQTIELIKYLMEFNSSPGD LMELSPLFSDDTRVAEAASIAQKLRSFAEEDIGRQGISAPSVVGNATASRGLEVAVANLQDYCNELENRLLSKFDAASQRRELSTMAECAKILSQFNRGT SAMQHYVATRPMFIDVEVMNADTRLVLGDQGSQPSPNNVARGLSSLYKEITDTVRKEAATIMAVFPSPNDVMSILVQRVLEQRVTALLDKLLVKPSLGNL PSIKDGGLLPYLRMLAVAYEKTQELARDLRAVGCGDLDVEGLTESLFSSHKDEYPEHEKASLNQLYQGKMEELRSESQVSEGSGTIGRSKGASVASSHQQ ISVTVVTEFVRWNEEAISRCAVFSSQPATLAANVKEVFTCLLGQVSQYITEGLERARDGLIEAAALRERFVLGTNLSRRVAAAAASAAEAAAAAGESSFR SFMVAVQRCGSSVAIVQQYFANSISRLLLPVDGAHASSCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKATDYRSPDDGMIPDHRPTTACTR VVAYLSRILESAFTALEGQNKQAFLTELGNCLHKGLVTHWQKFTFNPSGGLRLKRDITEYGEFLRSFNAPTVDEKFELLGIMANVFIVAPESLSSLFEGT PSIRKDAQRFIQLRDDYKSAKLASKLSALWASSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	0	1
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	1.0	0.9431
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10037656 [exp]	2.0	0.9240
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	3.0	0.9342
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	3.2	0.9409
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	4.2	0.9027
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	8.1	0.8936
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	9.8	0.8738
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	9.8	0.8878
AT5G19400		SMG7	Telomerase activating protein ...		Lus10036041 [exp]	10.0	0.8945
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	11.8	0.9111

Compare expression of checked genes

Lus10007908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.