Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 118 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52760 59 / 3e-11 Copper transport protein family (.1) AT5G52740 58 / 5e-11 Copper transport protein family (.1) AT5G23760 56 / 2e-10 Copper transport protein family (.1) AT5G52750 56 / 3e-10 Heavy metal transport/detoxification superfamily protein (.1) AT1G63950 52 / 8e-09 Heavy metal transport/detoxification superfamily protein (.1) AT5G26690 47 / 7e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G05920 46 / 1e-06 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 46 / 6e-06 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G55790 44 / 1e-05 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036395 [exp] 130 / 7e-38 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 92 / 2e-23 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 91 / 2e-21 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 85 / 4e-21 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 87 / 2e-20 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039285 [exp] 79 / 1e-18 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027522 [exp] 79 / 1e-18 AT1G01490 83 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 71 / 2e-15 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10024672 [exp] 67 / 4e-14 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G163400 [exp] 108 / 5e-30 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 108 / 8e-30 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 100 / 3e-27 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 99 / 1e-26 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 92 / 9e-24 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 88 / 2e-22 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 82 / 3e-20 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 82 / 6e-20 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147300 [exp] 66 / 7e-14 AT1G01490 87 / 2e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.008G220100 [exp] 66 / 8e-14 AT1G01490 66 / 5e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10007911 pacid=23143180 polypeptide=Lus10007911 locus=Lus10007911.g ID=Lus10007911.BGIv1.0 annot-version=v1.0 ATGGTGCAGAAGGTGGTGCTGAAGCTGGATTTGCATGATGACAAGGCAAAGCAGAAGGCTTTGAAGACGGTTTCTACTCTTTCAGGAATTGATTCAATAG CGATGGATATGAAGGAGAAGAAGATGACAGTGATAGGGACAGTGGATCCAGTAAACGTGGTGAGCAAACTCAGAAAACACTGGCCCACAACTGACATCAT CTCTGTTGGGCCGGCGAAGGAGCCCGAGAAGAAAGAGGAGCCCAAGAAGGAAGAAGGCGCGAAGAAGGAGGAAGGCGGCTCAAATAAAGATGAGCCCAAG AAAGAAGAAGGCGGAGACAAGAAAGACGGCGGAGGAGGAGGAGAAAAGAAAGCCGAGGAAGCCGGCGGCGGGAAGAAGGAAGAAGCTGCTGCCGGCGGCG GTGGAGAGCAAAAAGACGGGGAGAAGAAGGAAGGCGACGGTGAGAAGAAAAAGGAGGAGCAGCCTGTGGTTGCGTTGGCGAATGTGTCCCCACAGCCGCC ACCGGACCCGGTGTTGGAGCTTGTGAAGGCTTATAGAGCATACAATCCTCAAATGACTAGCTACTACTATGTTCAAAGTATGGAGGAGAACCCAAATGCA TGTGTCATATCTTGA
AA sequence Show only first row Show all	>Lus10007911 pacid=23143180 polypeptide=Lus10007911 locus=Lus10007911.g ID=Lus10007911.BGIv1.0 annot-version=v1.0 MVQKVVLKLDLHDDKAKQKALKTVSTLSGIDSIAMDMKEKKMTVIGTVDPVNVVSKLRKHWPTTDIISVGPAKEPEKKEEPKKEEGAKKEEGGSNKDEPK KEEGGDKKDGGGGGEKKAEEAGGGKKEEAAAGGGGEQKDGEKKEGDGEKKKEEQPVVALANVSPQPPPDPVLELVKAYRAYNPQMTSYYYVQSMEENPNA CVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	0	1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	2.0	0.9137
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	2.2	0.9214
AT3G53850			Uncharacterised protein family...		Lus10004698 [exp]	3.5	0.8808
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10011336 [exp]	7.9	0.8937
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10015172 [exp]	8.5	0.8682
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	12.8	0.8929
AT5G35690			unknown protein		Lus10000922 [exp]	14.1	0.8697
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	16.0	0.8761
AT5G23760			Copper transport protein famil...		Lus10039224 [exp]	16.4	0.8560
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	16.7	0.8613

Compare expression of checked genes

Lus10007911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.