Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01500 321 / 2e-109 Erythronate-4-phosphate dehydrogenase family protein (.1) AT1G19400 194 / 4e-60 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 172 / 3e-51 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT5G04790 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036394 [exp] 412 / 3e-146 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10005124 [exp] 387 / 1e-135 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10018819 [exp] 296 / 1e-99 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10016311 [exp] 165 / 1e-48 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 164 / 3e-48 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10042323 [exp] 132 / 5e-36 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10026339 [exp] 126 / 6e-34 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089600 [exp] 343 / 3e-118 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 330 / 4e-113 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.009G115800 [exp] 184 / 5e-56 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.002G260900 [exp] 178 / 1e-53 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007912 pacid=23143203 polypeptide=Lus10007912 locus=Lus10007912.g ID=Lus10007912.BGIv1.0 annot-version=v1.0 ATGGGTCACCAGGAACACGAATCCAATTCCTACAGCATTATCTCGAGTTCGTCATGGCTGGAAATCCGGCTCTTCTACGTCCGGATCACCCCTTGTATAA TCGACACAGTCCCTGACCACCTAACTCTCCGTCACCTCCGCCGCGAGACCAGCAACCATCTCGAAATCAACGGATCAAAGATCCCTGCCGACGATTCCGC CACCGTCACCCTCCGCCGCGACCGCATCGATAAGGAGTCCTCCGAGGTCACCTACGTCAGCACCGATAGCGTCCGCGTCACCGGCGCTCTCGAATTCGAG GTCCTCGAAGGGGACCAGGAGGAGGAGGACGGCGGAGGAGAGAACAGTGGCAGCAGTGAATTGCTCCTCTGTGGATCATTCGAGAGGATGGAGTCGACTT GGGGGGAGAACGATTCCAAGACCGGGTGGAGCATGGAGTGCTACGTCGCGGCGTCGGTAGGGGAAGGGAACTCGCTCTTCTTCCAGCCGAAGATGGGGGC TCCGGCTCCGGCGATCGAGGTCTACATCGCCGGCTGCTGCGGCGGCGTCCCAGTGATAATGACAAAGACGATTATGGTGAGTCCGAGGAAGAAATTGTCC AGGCACGCCACTCTGGATGCGATTCCGGAAGACGAAGAGCTGGGTAAGGCGGAGGATTACATGATGAAGGAGCAGATCGACGGCGGTAATGACAATGCCT CACCGCTTCGCCTGCGTATACCCCCGTGTAGTGAATCAGGAGACGATGACTACGAGCCGGATGTGAAACTGGGAGCAAGATGCTACAACGAAGACTTATA TTACGGCGAGGATGGCCAGCTCACTTGGTTCAACGCAGGTGTTCGCGTTGGTGTAGGAATTGGTCTCGGTATGTGCGTTGGTGTCGGGATTGGGGTTGGT CTTCTCATGCGTTCGTACCAAGCAACTACCAGCAACTTTAGGCGGAGGTTCTTGTGA
AA sequence Show only first row Show all	>Lus10007912 pacid=23143203 polypeptide=Lus10007912 locus=Lus10007912.g ID=Lus10007912.BGIv1.0 annot-version=v1.0 MGHQEHESNSYSIISSSSWLEIRLFYVRITPCIIDTVPDHLTLRHLRRETSNHLEINGSKIPADDSATVTLRRDRIDKESSEVTYVSTDSVRVTGALEFE VLEGDQEEEDGGGENSGSSELLLCGSFERMESTWGENDSKTGWSMECYVAASVGEGNSLFFQPKMGAPAPAIEVYIAGCCGGVPVIMTKTIMVSPRKKLS RHATLDAIPEDEELGKAEDYMMKEQIDGGNDNASPLRLRIPPCSESGDDDYEPDVKLGARCYNEDLYYGEDGQLTWFNAGVRVGVGIGLGMCVGVGIGVG LLMRSYQATTSNFRRRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10007912 [exp]	0	1
AT1G22730			MA3 domain-containing protein ...		Lus10012205 [exp]	8.4	0.7013
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	12.1	0.7124
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	14.5	0.7176
					Lus10031757 [exp]	29.3	0.6876
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	38.7	0.6863
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	39.4	0.6907
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	48.1	0.6767
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	50.5	0.6648
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	54.1	0.6607
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	54.4	0.6700

Compare expression of checked genes

Lus10007912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.