Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01510 839 / 0 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68010 65 / 5e-11 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 50 / 2e-06 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G17745 45 / 0.0002 PGDH D-3-phosphoglycerate dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036393 [exp] 1099 / 0 AT1G01510 875 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014115 [exp] 70 / 3e-12 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10019793 [exp] 69 / 5e-12 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10006708 [exp] 64 / 1e-10 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10025795 [exp] 63 / 2e-10 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 62 / 4e-10 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 62 / 5e-10 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 61 / 1e-09 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014133 [exp] 55 / 8e-08 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089400 [exp] 967 / 0 AT1G01510 808 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G163200 [exp] 940 / 0 AT1G01510 815 / 0.0 ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G175800 [exp] 64 / 2e-10 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.003G052700 [exp] 57 / 1e-08 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 56 / 5e-08 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10007913 pacid=23143221 polypeptide=Lus10007913 locus=Lus10007913.g ID=Lus10007913.BGIv1.0 annot-version=v1.0 ATGTCACACCGTAACAACAACCCGGCACCACCGCCTCTGCCACTAGTGGTCACTCTCAACTGCGTCGACGATTGCGGCGTCGAGCAAGAATCTCTCTCCG GAGTGGCCGCAGTCGAGCACGTCCCGCTAAGTCGTCTGGCCGATGGTAAGATCGAATCCGCCTCTGCCGTCCTCCTCCATTCCCTCGCTTACTTGCCTCG AGCTGCTCAGCGGCGTCTCCGCCCTTATCAGCTCATCCTCTGCCTCGGCTCCGCCGACCGTGCGGTGGACTCTGCTCTCGCCGCCGACCTAGGTCTCCGA CTCGTCCACGTTGACACATCCAGGGCTGAGGAGATCGCCGATACGGTTATGGCCCTTTTTCTTGGATTGGTGCGTCGGACTCACTTGCTCTCTCGCCATG CCTTGTCGGCATCGGGATGGTTGGGATCGGTGCAGCCGCTTTGTAGAGGAATGAGGAGATGTAGAGGGATGGTATTGGGAATCGTCGGCAGATCTGCTTC TGCCAGAGCTCTAGCTAGTAGGAGCTTGGCGTTCAAGATGAGCGTCCTTTATTTCGATGTTTATCAGGGAAATGGACAGGTCAGCAGGTCCTCAATCACT TTTCCGTCAGCTGCTCGAAGAATGGATACTCTTAACGATTTGCTAGCTGCTAGTGACCTTATCTCGCTTCACTGTGCTTTAACTAACGACACAGTTCAGA TATTGAGTGCAGAGTGTTTGCAGCATGTAAAGCCTGGTGCCTTTCTAGTGAATACAGGCAGCTGTCAGCTTCTTGATGACTGTGCTTTAAAGCAGCTTCT GATCGATGGCACATTGGCTGGCTGTGCTTTGGATGGCGCTGAAGGTCCACAATGGATGGAAGCATGGGTAAAAGAGATGCCCAATGTATTGATACTTCCT CGCAGTGCAGATTACAGTGAAGAAGTGTGGATGGAGATACGAGAGAAGGCAATCTCTATATTGCAGTCATTTTTCTTTGATGGAGTTATCCCAAAGGATG CTATCTCTGACGCAGAAGAGGATGTAGATGAATTGGGTGACGAGACTGAACCGTTTCACAAAAAAGACAAAGAGAGTTCTGAGCATATGACAGATGATTT TAAGTTGAGTCCAGAAAGTAGCAATAGAAGAGCTATAGAACAATTAACTGAATCTCCTGGGCAGGCTCAGGTGTCTAGCTTGTCTCAAAACACTACACCA AAATCTGACGGAAGACGTAGTAGGTCTGGGAAAAAGGCTAAAAAGAGACACGGTCGACAGAAGGCAATGTCGAAATCAAACGATCCTTCCCAACTGGAGA AGGAAAGTACTTCGCATCAAGAAGATGATACTGCCTTGAGTGGCACTGACCAAGTTTTGAGTTCTGGATCCCGTTTTGCTTCTCCCGAACCATCAAGAAG TAGGAAGACACCTATAGAGGCTATGCAAGAGTCTCCTTCTGACCAGTTTAAAAGCTCGAGCAAGCATTTCAGTGGAAAGCCTTCTGAACTTCTGAAAGAT GGATGTGTTATAGCTCTGTATGCAAGAGATAGACATGCACTCCATGTGTCTAGGCAAAGAGTTAAAGGAGGTGGTTGGTTTTTGGATGCCATGTCATCTG TCACCAAAAGAGATCCTGCCGCACAGTTCCTTGTTGTTTACAGAAACAAGGAAACAATGGGACTCCGTTCTTTCGCTGCTGGTGGGAAGCTATTGCAGAT TAACAGAAGAATGGAGTTTGTATTTGCAAGCCATAGCTTTGACGTGTGGGAGAGTTGGATGTTGGAAGGTCCCCTGGAAGAATGCAGGCTGGTCAACTGT AGAAATCCTTTGGCGGTATTGGATGTGTGCATCGAGATCCTAGCGGCTGTCGGAGAAGACGACGGAGTTACTCGTTGGCTAGATTAG
AA sequence Show only first row Show all	>Lus10007913 pacid=23143221 polypeptide=Lus10007913 locus=Lus10007913.g ID=Lus10007913.BGIv1.0 annot-version=v1.0 MSHRNNNPAPPPLPLVVTLNCVDDCGVEQESLSGVAAVEHVPLSRLADGKIESASAVLLHSLAYLPRAAQRRLRPYQLILCLGSADRAVDSALAADLGLR LVHVDTSRAEEIADTVMALFLGLVRRTHLLSRHALSASGWLGSVQPLCRGMRRCRGMVLGIVGRSASARALASRSLAFKMSVLYFDVYQGNGQVSRSSIT FPSAARRMDTLNDLLAASDLISLHCALTNDTVQILSAECLQHVKPGAFLVNTGSCQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILP RSADYSEEVWMEIREKAISILQSFFFDGVIPKDAISDAEEDVDELGDETEPFHKKDKESSEHMTDDFKLSPESSNRRAIEQLTESPGQAQVSSLSQNTTP KSDGRRSRSGKKAKKRHGRQKAMSKSNDPSQLEKESTSHQEDDTALSGTDQVLSSGSRFASPEPSRSRKTPIEAMQESPSDQFKSSSKHFSGKPSELLKD GCVIALYARDRHALHVSRQRVKGGGWFLDAMSSVTKRDPAAQFLVVYRNKETMGLRSFAAGGKLLQINRRMEFVFASHSFDVWESWMLEGPLEECRLVNC RNPLAVLDVCIEILAAVGEDDGVTRWLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Lus10007913 [exp]	0	1
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	7.4	0.9252
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	14.7	0.9114
AT4G16180			unknown protein		Lus10037780 [exp]	19.0	0.9050
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	22.5	0.9062
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10006565 [exp]	22.8	0.9075
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	28.6	0.9043
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	30.0	0.9015
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	30.5	0.9058
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	31.1	0.9015
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	35.7	0.9045

Compare expression of checked genes

Lus10007913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.