Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01310 352 / 2e-123 Ribosomal L5P family protein (.1) AT5G45775 52 / 4e-08 Ribosomal L5P family protein (.1.2) AT4G18730 52 / 4e-08 RPL16B ribosomal protein L16B (.1) AT3G58700 52 / 4e-08 Ribosomal L5P family protein (.1) AT2G42740 52 / 5e-08 RPL16A ribosomal protein large subunit 16A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036390 [exp] 505 / 0 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1) Lus10033169 [exp] 308 / 2e-107 AT4G01310 238 / 3e-80 Ribosomal L5P family protein (.1) Lus10010251 [exp] 221 / 2e-73 AT4G01310 179 / 2e-57 Ribosomal L5P family protein (.1) Lus10036391 [exp] 117 / 1e-33 AT4G01310 82 / 1e-20 Ribosomal L5P family protein (.1) Lus10020715 [exp] 53 / 3e-08 AT2G42740 359 / 5e-129 ribosomal protein large subunit 16A (.1) Lus10033607 [exp] 52 / 7e-08 AT2G42740 362 / 7e-130 ribosomal protein large subunit 16A (.1) Lus10017648 [exp] 52 / 7e-08 AT2G42740 343 / 1e-122 ribosomal protein large subunit 16A (.1) Lus10029824 [exp] 44 / 5e-05 AT2G42740 347 / 5e-124 ribosomal protein large subunit 16A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154600 [exp] 375 / 1e-132 AT4G01310 361 / 4e-127 Ribosomal L5P family protein (.1) Potri.014G089100 [exp] 316 / 3e-109 AT4G01310 311 / 3e-107 Ribosomal L5P family protein (.1) Potri.011G068900 [exp] 52 / 4e-08 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181600 [exp] 52 / 4e-08 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181501 [exp] 52 / 4e-08 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.011G069200 [exp] 52 / 4e-08 AT2G42740 318 / 1e-112 ribosomal protein large subunit 16A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00673 [flax] [poplar] Ribosomal_L5_C ribosomal L5P family C-terminus CL0652 [flax] [poplar] S24e_L23_L15e PF00281 [flax] [poplar] Ribosomal_L5 Ribosomal protein L5
Representative CDS sequence Show only first row Show all	>Lus10007915 pacid=23143223 polypeptide=Lus10007915 locus=Lus10007915.g ID=Lus10007915.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCTCCATCGCTCCTACTGTCGCCGGCGGCGACCTTTCGAGGCCAAGCTCTCGTGCTTTCTCCTCCTACATCCGCGCGAGTACCTTTCAGAA ACCCTAGACACGGGAACGGGGTAGTGTCAGTGAGGGCGGCGACGGAACAGGTCGTGTTGTTGGAGAAATCGGAAGCCCTTAATGTCAATCGCCTGAAAAC CAATTACCTCGAGAAGATCGTTCCTCGGCTCATGGAAGATTTTTCCTATACCAACATTCACCAGGTTCCGAAAGTAGCTAAGATCGTGCTAAATTGCGGG ATTGGAGAGGCTGCACAGAATGCCAAGGGATTGGACGCAGCAGTGAACGATTTAGCTCTGATTGCAGGTCAGAGGCCAGTGAAAACACGAGCTAAAAACT CCGTCGCCACTTTCAAGATCAGGGAGGGTCAGCCCCTCGGCATTGCAGTGACTCTCAGAGGAGCTGTGATGTGGGCATTCTTAGACAGGCTGATAAACTT GGGGCTACCAAGAACAAGGGATTTCCAAGGACTGAATCCAAACAGCTTTGACGGGCACGGGAACTATAGCATCGGTATAAGGGAGCAGGGTGTGTTCCCA GAGATAAAGTTCGATCTAGCCGGGAAGCCAAGAGGGATGGATGTCTGCATTACAACCACTGCCAACACAGATCAAGAAGCCCAAAAACTGCTGGCTTTGA TGGGGATGCCCTTCAGGGACGGGGGTGGTGATGCCGATGCCTCTAGTTTGGTACGGAAGAAGAAATTGAAGTCCCACCACTTTGATCCGAAAGCAAGAGG GAAGTCCACTCGAAGACGTTAA
AA sequence Show only first row Show all	>Lus10007915 pacid=23143223 polypeptide=Lus10007915 locus=Lus10007915.g ID=Lus10007915.BGIv1.0 annot-version=v1.0 MASSPSLLLSPAATFRGQALVLSPPTSARVPFRNPRHGNGVVSVRAATEQVVLLEKSEALNVNRLKTNYLEKIVPRLMEDFSYTNIHQVPKVAKIVLNCG IGEAAQNAKGLDAAVNDLALIAGQRPVKTRAKNSVATFKIREGQPLGIAVTLRGAVMWAFLDRLINLGLPRTRDFQGLNPNSFDGHGNYSIGIREQGVFP EIKFDLAGKPRGMDVCITTTANTDQEAQKLLALMGMPFRDGGGDADASSLVRKKKLKSHHFDPKARGKSTRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	0	1
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	1.4	0.9571
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10018212 [exp]	2.0	0.9549
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	2.2	0.9602
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	5.9	0.9482
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	6.0	0.9562
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	7.1	0.9517
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	9.5	0.9510
AT1G11430			plastid developmental protein ...		Lus10018398 [exp]	9.7	0.8946
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	9.7	0.9305
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	10.6	0.9275

Compare expression of checked genes

Lus10007915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.