Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01290 474 / 2e-150 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036389 [exp] 1903 / 0 AT4G01290 483 / 4e-154 unknown protein Lus10039283 [exp] 50 / 1e-05 AT4G01290 50 / 5e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089200 [exp] 823 / 0 AT4G01290 501 / 1e-160 unknown protein Potri.002G163000 [exp] 822 / 0 AT4G01290 499 / 1e-159 unknown protein Potri.004G073400 [exp] 72 / 2e-12 AT4G01290 60 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007916 pacid=23143205 polypeptide=Lus10007916 locus=Lus10007916.g ID=Lus10007916.BGIv1.0 annot-version=v1.0 ATGAGTACAGTAAATGAAGAGCGTAATGGCGTGGATCTGCATGAGGACGCCGGCTCTGAATCTCAAAAAAGGTCGAGATTGCTGTACACTCGAGAGTTTC TATTATCTCTTAGCGAGTTGGATGTTTGCAAAAGGCTGCCAAGTGGGTTTGACCAGTCACTTTTGAGTGAATTTGAGGATACTTCTCAAGATCGGTTTCG GATCTCTGGTGGTTTGTCGTCACAAGGTTATAAGCGGCCAGAGTATGGTTCTTCCCCACCAACCAGAGGAGATTCCAGCAATTTTTCTAGGGGGGTTCAT GGAAGATGGGATAACCGTTCCTCAGTTAGAAGTGACCGTGACAGTGATTCACAATCCGATATGGAATCAGATACTGGAAGACGTTATGGCAACCAATCTC GGCGAGCTACGCAGGCTCCTGAACACGATGGACTTCTTGGAAGTGGTTCTTTCCCAAGGCCACCTGGATTTGCGGTTGGCTCATCAACTTCAAAGTTCCG AGTGAATAGTGATAGTCATCAGCTTAGTAGGAGTAATGAACCGTATCATCCACCTCGTCCTTATAAGGCTGTTCCTCATTCCCGGAAGGAAACCAATGAC TCATTTAATGATGAAACTTTTGGCTCTTCTGACTCCACAAACGTGGATAGAGAAGAAGAGGAAAGAAAGCGTAGAGATACCTTTGAGTTATTAAGGAAGG AACAGCATAAAGCTTTTCTTGAGAGGCAGAAGTTGAATCCAGGAAAGGGTAAAGATGAGTTTATTTCTTCATTGATGGAAGATTCAAAAGATGACAATCG AAGTCAAGGAAGAAGCACTGCATTGGATGGACCGGTGTCAATTAATGATTCTCAGAAAAGTAACATCTCATCTGCACCTGTATCTAGACCTCTAGTGCCT CCTGGATTTTTGAGTGGTGCGGCGGATAAGAGTGCTGGAACTAAAGCTACGACCAACACTCAGTTAGAGGTAGTCGATGAGCTTGAAGGCAGTCTTTTAC ACAATAAAGGGAGCAATTTCTTGAATGGACCTTCACATAATCAAGAACGGACGCAGCGTCTGGTGCCACTGAAAGCAAGTGAGCAACAACTTGGCAATGT TAGTATTGATGTTTCAATCAATGGCAGCAAAAGTCAAAAGCCAGTGGATATACCTTCGGCGGTGGATGCTTCAAGCAAACTAATTGGGAAAGATGCTCAA TATTACGAGACTCCCAAACCCTTGGAAGTTTCTGAAAATCCAAAGAACAGTGGAATTATAGATCTGAGCCGCCAAGATGGGATGAAAGGCAAATTCATTG GTGGGTCTGCCCCGCCTGCCTCCACCTCAATTCTGGAGAAGTTTTTTGGAAATGCATTAGCTCTAGATGGTGATTCTTCCGGTTCTATTGAGCAAAATGA TGCCAAAACGGACGACACGTTGGTTTCTTCTGATGTCCACTCTTCTAAGTTTGCTCAATGGTTTCTTGAAGAAGAAAAGAATCAAGTTGATGATGTCCCA TCTGGTGAGTCAAACAATTTGCTCTCTCTGATTGTGGGCGCGGAAAAAGGTTTGCCTCACGCTTTTGGTGGTAAAGCTACTGAGCGCTTCTTGCCAGACT TGTCCATCCAAAATGGCGCATTTGAAGGCAGGGATGGGAGATCAAGCTCAGTTATGGCTACTGCAGCTGAGCTAGGAAAAAACAAGCACGTGTTCTTCAG TAATAGTAATAGTAAACCGGAGGAAGTTCCAGCAGTGCTTACATGTGAAGACCTTGAGCAGTCAATACTGTCGGAGATTCCTGAAAGCGGTTCATCATTG CCTGCTAGTGAACCCGACTGGAAAGCTGGTGGTCAGCAGAAAGCCAATGTTGATCTTCTCTCTTTGTTGCAGAAGGGAACAAGCTTGAATGGTGATGTGC CTTCTGCCATTCATGGGGCTAAGTCCGTCGAAAACATACAGGATGTAGAAGAACCAAGAGGTGGGGCTCCAGTCATCTCCATACGGTCAAATGCTGCACA TTCATCTATTTCTGGAAAGCCTTTGACTCTAGAAACTCTGTTTGGAACTGCTTTTATGAAAGAACTGCAGCCAGTAGGTGTCGGAAAGAGCAAAGCTGGT GTTACAAAAGTTGATGGCCCTGAATCCCACGGTGATTCTTACCCTGAAATTGATGCTGGTATGCTTCGGTCTACTTTAGAAATGACATCAAGCGTACCTG ATCTGCGAAACGGTATTGCAGCATCAAACCAGCAGCAGGAGATTAAGTCAGATAGGGATGAAGACCATCTTGGGGGGTTTAATTCTCGTAACAAAGAATT GGTCTCTAGACATGGTGGATTTGATCCATCTTTTTCATTTGGGTTCCGGGAGGAGCACAACCTGTCCAGAGGCAGTCACCCTCTGAATCCACATGGTAGG AGCATATCTAATATGATTGAAGGGATGGCTACAGAAGAGACACAAGTTGACATTGCTCAAAAGCTTGCAGCTTTAAGTTCTTCGTTCAGAGATGAAAGGC TTATCACAAGGGGCCAACAAGATGGTCCATCTTTTGGTCGCGGTCCTTATGACATGAGGGAACTGGAGGCTCAGTATCAAAATCATCGGGTCCGGCCATC TTCACAACAGCTTCATGCCCCTCATCAAATGAATCATGCCGGGTCGATGTTCCACCAGATGGATTCTCATTCTCCAAACCTTGGTACTCAGATGAAGTTC ATGTCCCCAGAGAATATCATTCATCGAGATGCTCCTAATAATCCGTTTCCTGGGAATATGCTACGTCCACCTTTCCATCAACCTAACAGCACAATCACAG GGTTTGATCCCAGTCCACAGAATGCGATGCTGCAGCAGATGCATATGGCCGGCAATTTCCCTCCTCACATGTCACATGGATTTCCTAGAGGAGCTCCACA TCCTAACAACCAGGTGCCGGGTTCTGCTCCAGATCCAAATTCAATCCATGGATTCCCTTTCGGCCAGAGGCAGCCCAACTTAGGTCCGTTTGGGATTCCA CCCCATGGTCCCGTAGCTGAGAGTGGGAGCAGCCATCCAGCCGCTTTCCAGAAGCTAATTGAGATGGAACTCAAGTCAAAGGCGGCGGGGAAGCAGGTCC ATCCGTTGTCTGGTCAAGAGCTGGACATGGGTTTTGGATACAGATAA
AA sequence Show only first row Show all	>Lus10007916 pacid=23143205 polypeptide=Lus10007916 locus=Lus10007916.g ID=Lus10007916.BGIv1.0 annot-version=v1.0 MSTVNEERNGVDLHEDAGSESQKRSRLLYTREFLLSLSELDVCKRLPSGFDQSLLSEFEDTSQDRFRISGGLSSQGYKRPEYGSSPPTRGDSSNFSRGVH GRWDNRSSVRSDRDSDSQSDMESDTGRRYGNQSRRATQAPEHDGLLGSGSFPRPPGFAVGSSTSKFRVNSDSHQLSRSNEPYHPPRPYKAVPHSRKETND SFNDETFGSSDSTNVDREEEERKRRDTFELLRKEQHKAFLERQKLNPGKGKDEFISSLMEDSKDDNRSQGRSTALDGPVSINDSQKSNISSAPVSRPLVP PGFLSGAADKSAGTKATTNTQLEVVDELEGSLLHNKGSNFLNGPSHNQERTQRLVPLKASEQQLGNVSIDVSINGSKSQKPVDIPSAVDASSKLIGKDAQ YYETPKPLEVSENPKNSGIIDLSRQDGMKGKFIGGSAPPASTSILEKFFGNALALDGDSSGSIEQNDAKTDDTLVSSDVHSSKFAQWFLEEEKNQVDDVP SGESNNLLSLIVGAEKGLPHAFGGKATERFLPDLSIQNGAFEGRDGRSSSVMATAAELGKNKHVFFSNSNSKPEEVPAVLTCEDLEQSILSEIPESGSSL PASEPDWKAGGQQKANVDLLSLLQKGTSLNGDVPSAIHGAKSVENIQDVEEPRGGAPVISIRSNAAHSSISGKPLTLETLFGTAFMKELQPVGVGKSKAG VTKVDGPESHGDSYPEIDAGMLRSTLEMTSSVPDLRNGIAASNQQQEIKSDRDEDHLGGFNSRNKELVSRHGGFDPSFSFGFREEHNLSRGSHPLNPHGR SISNMIEGMATEETQVDIAQKLAALSSSFRDERLITRGQQDGPSFGRGPYDMRELEAQYQNHRVRPSSQQLHAPHQMNHAGSMFHQMDSHSPNLGTQMKF MSPENIIHRDAPNNPFPGNMLRPPFHQPNSTITGFDPSPQNAMLQQMHMAGNFPPHMSHGFPRGAPHPNNQVPGSAPDPNSIHGFPFGQRQPNLGPFGIP PHGPVAESGSSHPAAFQKLIEMELKSKAAGKQVHPLSGQELDMGFGYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01290			unknown protein		Lus10007916 [exp]	0	1
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	1.4	0.7889
AT5G04420			Galactose oxidase/kelch repeat...		Lus10038666 [exp]	12.3	0.6777
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10023865 [exp]	21.2	0.7788
AT1G15780			unknown protein		Lus10025450 [exp]	23.9	0.7046
AT1G80950			Phospholipid/glycerol acyltran...		Lus10003950 [exp]	28.0	0.7238
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	30.0	0.7488
AT1G15780			unknown protein		Lus10025452 [exp]	33.4	0.6874
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	35.1	0.7382
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	36.9	0.7226
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	37.8	0.6958

Compare expression of checked genes

Lus10007916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.