Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46090 396 / 5e-138 Diacylglycerol kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036388 [exp] 482 / 6e-172 AT2G46090 439 / 9e-155 Diacylglycerol kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162900 [exp] 441 / 3e-155 AT2G46090 492 / 3e-175 Diacylglycerol kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10007917 pacid=23143178 polypeptide=Lus10007917 locus=Lus10007917.g ID=Lus10007917.BGIv1.0 annot-version=v1.0 ATGCTCTGCTGCTATCGGATAGCATCGGTAGGAGGAATACTTTCACTGTCTTCCTTCTCTTCTCCTTCTCCTTCTTCAATGGCGGTCCCAAATCCGTCAA TCCTAAGATCCGAGTCTCGTTCCCTGATGTCTTCCTCCTCTGATCTCTCCCTCTTGTCCGCTGCCGACTCCTCTTCTTCTCACCGTCGTGATCTCGTCTT CATCATATGTGAATCGTTGACTACTGGCCCTTATCACGCCATTGATATAACGAGAGAGGCCATAAGAGAAGGTGCTGATGCTGTCATTGCAGTTGGAGGT GATGGTACTTTGCACGAGGTGGTTAATGGATTCTTTTGGGATGGGAAACCTGTTACCAAACATGATAGAGATAACGATGCTTCACGTTCAACAGCCCTTG GTCTCATTCCCTTGGGCACTGGTTCAGATTTTGCCAGAACTTTGGGCTGGAAAAATGATCCTCATGAAGCTATCGATCGGATTTTCAAGGGTTTGAGAAC GAGAGTTGATGTCGGTGTTATTTCTGGTGGCAGTCAAGAATCGCATTACTTTATTAATGTTGCTGATATTCATCTGAGTGCAAAGGCCGGTTACTATGCA GCAAGATACAAAAGATTCGGTAATCTGTGCTATGTTATTGGTGCTCTGCAGGCCTTCATGAGTCACAATAACCAGGACCTCAGAATCAAGGTGAATGGAG GAGAGTGGGAAACATGCCCTAAAGTTACGGCATTGTGTATTGGAAATGCAAAGTACTTCGGCGGTGGCATGAAAATAACTCCGAATGCCGACCCTTCAAA TGGAAACTTTGAGGTTGTTGTCCTCCAAGACTTCAAATGGTATGACTTTATCCTGAAGCTACATAAGCTTTACAACGGTACACATTTATCTGTGCAGAAT GTAACCTCCAGAAGGGCGCTCTCTATCGAGGTGGAGGACATTTCGGGCGGTGGGAAGATTTTCGTGCAGTCGGACGGAGAGTACTTGGGTTTCCTTCCTA GGAAATTCTACATTCTACCGTCTGCAATTGAGATGATACGTTGA
AA sequence Show only first row Show all	>Lus10007917 pacid=23143178 polypeptide=Lus10007917 locus=Lus10007917.g ID=Lus10007917.BGIv1.0 annot-version=v1.0 MLCCYRIASVGGILSLSSFSSPSPSSMAVPNPSILRSESRSLMSSSSDLSLLSAADSSSSHRRDLVFIICESLTTGPYHAIDITREAIREGADAVIAVGG DGTLHEVVNGFFWDGKPVTKHDRDNDASRSTALGLIPLGTGSDFARTLGWKNDPHEAIDRIFKGLRTRVDVGVISGGSQESHYFINVADIHLSAKAGYYA ARYKRFGNLCYVIGALQAFMSHNNQDLRIKVNGGEWETCPKVTALCIGNAKYFGGGMKITPNADPSNGNFEVVVLQDFKWYDFILKLHKLYNGTHLSVQN VTSRRALSIEVEDISGGGKIFVQSDGEYLGFLPRKFYILPSAIEMIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	0	1
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	1.7	0.8134
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10020742 [exp]	4.4	0.7378
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	8.6	0.7916
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001704 [exp]	23.7	0.7554
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	26.0	0.7830
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10004986 [exp]	28.1	0.7526
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	31.2	0.7792
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	33.8	0.7632
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038636 [exp]	33.9	0.7173
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	36.1	0.7290

Compare expression of checked genes

Lus10007917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.