Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46100 290 / 9e-100 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) AT3G04890 86 / 3e-20 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036387 [exp] 440 / 7e-159 AT2G46100 283 / 8e-97 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10015938 [exp] 84 / 2e-19 AT3G04890 223 / 8e-74 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10009193 [exp] 65 / 2e-12 AT3G04890 199 / 5e-64 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10019445 [exp] 43 / 0.0001 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162800 [exp] 309 / 2e-107 AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.013G036500 [exp] 89 / 2e-21 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10007918 pacid=23143220 polypeptide=Lus10007918 locus=Lus10007918.g ID=Lus10007918.BGIv1.0 annot-version=v1.0 ATGGCGGCATTTCTACTCCATTCCTCCGGCTCGGTAATTCACCAACGGAGCAGCATAACTCTCGCTCCCGCTCGCCGCCGCCAAATCTCCAGAATTCAAT GCGACAAAGCAAGTAGCAGCGGTTCATCAGCCAAACAGCGGGAGGACTCCGATCAGCCGGGGAACAAAGCCATCCTGAAAGTAGCTTGGTATGCATCGGA GCTCCTGGGAGTCGCCGCTTCGATTTTCCGGTCACCGTCGTCCGTAATAGAGTCTCCCCGCAGCAATAATCTCGACCTTCCGACGGACGGTTCAACAGCA AGCCTTGATCGCTCCATGGTTGTCCAGACCATCCAGCAAGACTTCCAGAGATCGTATTTCGTCACAGGGAACTTGACACCGGACGCGTATGAAGAGAACT GCGAGTTCGCTGATCCGGCTGGCTCGTTCAAAGGGCTCCGCCGTTTCAAGAGGAACTGTTCCAACTTCGGCTTGCTTATCCAGACTTCGAATATGAAGCT CACCAAATGGGAAGACTTGGAGGATAAGGGAATTGGGCACTGGAAATTTAGCTGCATAATGTCATTCCCATGGCGGCCAATTCTTTCTGCAACTGGGTAT ACAGAGTACTACTTTGATCCACAGTCTGGACGAGTGTGCAGGCATATAGAGCATTGGAATGTGCCCAAAATGGCACTTCTAAAGCAGCTGCTGAGGCCCA GCCAAGGCAGAAAATCCTAG
AA sequence Show only first row Show all	>Lus10007918 pacid=23143220 polypeptide=Lus10007918 locus=Lus10007918.g ID=Lus10007918.BGIv1.0 annot-version=v1.0 MAAFLLHSSGSVIHQRSSITLAPARRRQISRIQCDKASSSGSSAKQREDSDQPGNKAILKVAWYASELLGVAASIFRSPSSVIESPRSNNLDLPTDGSTA SLDRSMVVQTIQQDFQRSYFVTGNLTPDAYEENCEFADPAGSFKGLRRFKRNCSNFGLLIQTSNMKLTKWEDLEDKGIGHWKFSCIMSFPWRPILSATGY TEYYFDPQSGRVCRHIEHWNVPKMALLKQLLRPSQGRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	2.0	0.9337
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	2.0	0.9366
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	2.4	0.9376
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	3.5	0.9137
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	3.7	0.9221
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	6.0	0.9099
AT4G14615			unknown protein		Lus10006639 [exp]	6.7	0.9357
AT2G35260			unknown protein		Lus10030958 [exp]	8.5	0.9204
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	8.8	0.9281
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	9.2	0.9289

Compare expression of checked genes

Lus10007918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.