Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01540 686 / 0 Protein kinase superfamily protein (.1.2) AT4G01330 655 / 0 Protein kinase superfamily protein (.1.2) AT4G02630 526 / 0 Protein kinase superfamily protein (.1) AT4G34500 478 / 3e-167 Protein kinase superfamily protein (.1) AT3G59110 461 / 4e-159 Protein kinase superfamily protein (.1) AT2G42960 447 / 5e-154 Protein kinase superfamily protein (.1) AT1G09440 439 / 2e-151 Protein kinase superfamily protein (.1) AT5G18500 439 / 7e-151 Protein kinase superfamily protein (.1.2) AT3G17420 435 / 2e-149 GPK1 glyoxysomal protein kinase 1 (.1) AT1G56720 434 / 8e-149 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036386 [exp] 837 / 0 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 537 / 0 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 532 / 0 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 514 / 3e-180 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 503 / 4e-178 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 460 / 9e-159 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 456 / 1e-158 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 472 / 3e-158 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10001055 [exp] 462 / 6e-158 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088800 [exp] 687 / 0 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 533 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 494 / 1e-172 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 488 / 4e-170 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 464 / 2e-160 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 463 / 3e-160 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G139500 [exp] 459 / 2e-159 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 456 / 2e-157 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 454 / 1e-156 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 444 / 1e-152 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007919 pacid=23143226 polypeptide=Lus10007919 locus=Lus10007919.g ID=Lus10007919.BGIv1.0 annot-version=v1.0 ATGTCTCTGTACGACGCTGCATTACTGAACACTGAGCTCTCGAAGCCAACATCCATCTTCGGCCTCCATCTATGGGTGGTCATCGGCATCCTTCTCGGCT CCCTCATAGTCCTCGCCCTCTTCCTCCTCTCACTCTGCCTAACTTCCCGCCGGAAAAGCCGGAAATCGGCCAAATTAGCCGACCCCACCCCGCCGGTCTC TAAAGAAATCCAGGAGATCGTTCACTTCCCAGCTCACGACCACCACCACCACCACCACGCGCCGCCGGTACCTGAGATTCAGGTAGAGATCGGTAAGATC GAGCACCGCGTCGTGTTCTCCGACCGCGCTTCAAGTGGGGAAAGCAGAGCCACCGCCAGCGGCTGCGAGACTGCATCGTTTGGCAGCGGCAGCGTCGGGC CTGAGGTTTCTCATCTTGGCTGGGGACGGTGGTACACTCTGAGGGAGCTTGAGATTGCGACCGATGGACTCTGTGAGGAGAATGTGATTGGCGAAGGCGG GTATGGAATTGTCTATCGTGGCGTCCTGGGCGATGGAACTAAAGTTGCCGTCAAGAACTTGCTCAATAACAGGGGCCAAGCTGAGAAAGAGTTCAAAGTG GAGGTAGAGGCGATCGGAAGGGTTCGGCATAAGAATCTTGTGAGATTGTTAGGATACTGTGTTGAAGGTGAATACAGGATGCTTGTTTATGAATACGTTG ACAATGGTAATCTGGATCAATGGCTTCATGGTGATGTCGGAGTGGCGAGCCCTCTATCGTGGGATGTCCGTATGAATGTCATACTCGGGATGGCAAAAGC ATTGGCTTATCTCCACGAAGGTCTTGAACCGAAAGTTGTCCATCGAGACATTAAATCGAGCAATATACTCATCGATCGCAATTGGCTTCCGAAAGTTTCT GATTTCGGGCTCGCAAAGCTCCTCTGCTCCGAGCGGAGCTATGTCACCACTCGTGTCATGGGAACTTTCGGTTACGTAGCGCCAGAGTACGCTTGCACCG GAATGCTGAACGAGAAAAGCGATGTTTATAGCTTCGGGATACTTGTCATGGAAATAATCACCGGGAGAAGCCCCGTCGATTACAATCGTCCACAGGGAGA GGTGCATTTGGTGGAATGGCTAAAAACAATGGTTGGAAACCGGAAATCGGAAGAAGTAGTCGATCCAAAGCTGCTCGAATTGCCGTCGTCGAAGGCCCTG AAGCGAGTGCTTTTAGTAGCTCTCCGATGCGTGGATCCCGACGCGACGAAAAGGCCGAAAATGGGCCACGTGATTCACATGCTTGAAGCTGATGATGTTC TATTTCGCGATGGACGACGTATCGCAAGAGAAGCACCGGAGTCTGCGAAACTGAGTGAAGTGGTGATTTCTGATAAAAGTGAAGAAGAAGGTAGTTGCAG TAGGAACCCTGAGCAGCAAGCAGGCAGACGGAGATGA
AA sequence Show only first row Show all	>Lus10007919 pacid=23143226 polypeptide=Lus10007919 locus=Lus10007919.g ID=Lus10007919.BGIv1.0 annot-version=v1.0 MSLYDAALLNTELSKPTSIFGLHLWVVIGILLGSLIVLALFLLSLCLTSRRKSRKSAKLADPTPPVSKEIQEIVHFPAHDHHHHHHAPPVPEIQVEIGKI EHRVVFSDRASSGESRATASGCETASFGSGSVGPEVSHLGWGRWYTLRELEIATDGLCEENVIGEGGYGIVYRGVLGDGTKVAVKNLLNNRGQAEKEFKV EVEAIGRVRHKNLVRLLGYCVEGEYRMLVYEYVDNGNLDQWLHGDVGVASPLSWDVRMNVILGMAKALAYLHEGLEPKVVHRDIKSSNILIDRNWLPKVS DFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILVMEIITGRSPVDYNRPQGEVHLVEWLKTMVGNRKSEEVVDPKLLELPSSKAL KRVLLVALRCVDPDATKRPKMGHVIHMLEADDVLFRDGRRIAREAPESAKLSEVVISDKSEEEGSCSRNPEQQAGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	0	1
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	1.7	0.8632
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10036916 [exp]	3.0	0.8367
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	5.7	0.8459
					Lus10024338 [exp]	6.6	0.8294
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	8.1	0.8433
AT5G01710			methyltransferases (.1)		Lus10001267 [exp]	8.4	0.8332
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	8.9	0.8441
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	9.1	0.8562
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	9.4	0.8377
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	9.8	0.8050

Compare expression of checked genes

Lus10007919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.