Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46080 386 / 3e-134 unknown protein AT1G01550 353 / 5e-121 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) AT4G01360 204 / 7e-63 unknown protein AT3G61500 116 / 4e-30 unknown protein AT1G74450 46 / 3e-05 Protein of unknown function (DUF793) (.1) AT1G22030 43 / 0.0002 unknown protein AT1G77855 41 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036385 [exp] 627 / 0 AT2G46080 434 / 4e-153 unknown protein Lus10005122 [exp] 470 / 3e-167 AT2G46080 432 / 1e-152 unknown protein Lus10018821 [exp] 463 / 2e-164 AT2G46080 431 / 5e-152 unknown protein Lus10039581 [exp] 52 / 4e-07 AT1G01550 63 / 5e-11 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10005326 [exp] 47 / 2e-05 AT1G01550 61 / 3e-10 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10042809 [exp] 43 / 0.0003 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 42 / 0.0008 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088600 [exp] 431 / 1e-151 AT2G46080 431 / 1e-151 unknown protein Potri.002G162600 [exp] 428 / 1e-150 AT2G46080 456 / 7e-162 unknown protein Potri.010G171000 [exp] 110 / 3e-27 AT1G01550 69 / 7e-13 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Potri.008G085600 [exp] 83 / 9e-18 AT2G46080 52 / 3e-07 unknown protein Potri.002G090300 [exp] 45 / 3e-05 AT1G22030 360 / 2e-124 unknown protein Potri.003G018700 [exp] 45 / 4e-05 AT1G22030 266 / 2e-87 unknown protein Potri.002G067800 [exp] 44 / 0.0001 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10007920 pacid=23143188 polypeptide=Lus10007920 locus=Lus10007920.g ID=Lus10007920.BGIv1.0 annot-version=v1.0 ATGAGCCAACCACAGGAACCAAACCGACCTTTTTTCCCATTTGGAAATCCTTTTCGGATGATATCACCAAAGGGCTCTCAGATGTCTCCAAGCCTTGTCT CCGTATTGACTACTTTCGAGGAAACCTTGGCAGAGCGGTTGAGGAAACTCGTCCCCAAAGGCAAAGGCGACGTCTTGAGTCTTCCGTGGATGAAGTTAGC CATGGATTCGCTCTGCGAGACTCATAATGACATAAAGATGCTCATTACAAGTCTCGAGCTTCCCGTCACCGACTGGGATCAGAAGTGGATCGATGTCTAT TTGGACATCAGCGTAAGATTACTCGATATCTGTATTGCTTTCAGCTCCGAGATCACCAGGCTCAACCAAGGCCATCTCTTACTCCAGTGTGTCCTGCATA ATTTGGAATCCGGGACACCTGAGCGGTATATAAAGGCGCGATCTTCCCTTGACAACTGGAGAAACCACATTAGTTCGAGGAATCCGAGAGTTCAGAACTG TCGTTCTATCTTAGACAGTCTTGTGGAGTCGTTGGATCTTCCCAAGGTTAAGAATTCTGCCAAAGGGAAAGTCCTAATGCGTGCCATGTATGGTGTCAAG GCCGAGACGATATTTGTCTGCAGCGCATTTGCTTCAGCCTTTTCCAGTTCCTCGAACGATTTAGTCGATTTGAATGTTCCGGATACGTTTTTGTGGGCGC AGGCCTTTTCCGGTTTGCAGACGAGAGTGAATGTCGAAATCAGAGAGATATTCTCTTCCGGGAAGAAATCTACCGCCCTGAACGAGCTGGAAGCAGTTGC TTCTATCGTAAAGAAACTGTATCCTGCGATTCAAGATGGGGTAGAAGCCACCGAGGAGGAAGGGTTGAAGAGTTGCTTCACCGATCTGCAAGGGGGAGTG GTGAAGCTATCCGAAGGCCTGGATCTGGTAGGGAAACAAGTGGATATCTTCTTCAAGATAGTTCTTAGCGGGCGTGATGCTTTGCTTTGTAATCTAAGGG AGTCTTGTACTGATGGTAATGTTGTGACGGGAAGCCGCAGAGAGGATGAACTCGTTAGATGA
AA sequence Show only first row Show all	>Lus10007920 pacid=23143188 polypeptide=Lus10007920 locus=Lus10007920.g ID=Lus10007920.BGIv1.0 annot-version=v1.0 MSQPQEPNRPFFPFGNPFRMISPKGSQMSPSLVSVLTTFEETLAERLRKLVPKGKGDVLSLPWMKLAMDSLCETHNDIKMLITSLELPVTDWDQKWIDVY LDISVRLLDICIAFSSEITRLNQGHLLLQCVLHNLESGTPERYIKARSSLDNWRNHISSRNPRVQNCRSILDSLVESLDLPKVKNSAKGKVLMRAMYGVK AETIFVCSAFASAFSSSSNDLVDLNVPDTFLWAQAFSGLQTRVNVEIREIFSSGKKSTALNELEAVASIVKKLYPAIQDGVEATEEEGLKSCFTDLQGGV VKLSEGLDLVGKQVDIFFKIVLSGRDALLCNLRESCTDGNVVTGSRREDELVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46080			unknown protein		Lus10007920 [exp]	0	1
					Lus10024821 [exp]	1.0	0.9016
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	2.0	0.8760
AT2G46080			unknown protein		Lus10018821 [exp]	2.4	0.8663
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	3.5	0.8343
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	5.3	0.8319
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	5.9	0.8538
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10015273 [exp]	7.1	0.7967
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	7.5	0.8576
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034193 [exp]	7.7	0.7945
AT1G79660			unknown protein		Lus10041631 [exp]	8.8	0.7836

Compare expression of checked genes

Lus10007920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.