Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61490 717 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 651 / 0 Pectin lyase-like superfamily protein (.1) AT3G48950 632 / 0 Pectin lyase-like superfamily protein (.1) AT2G23900 587 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 448 / 1e-154 Pectin lyase-like superfamily protein (.1) AT4G33440 389 / 2e-131 Pectin lyase-like superfamily protein (.1) AT4G23820 388 / 2e-131 Pectin lyase-like superfamily protein (.1) AT3G16850 369 / 4e-124 Pectin lyase-like superfamily protein (.1) AT5G41870 359 / 2e-120 Pectin lyase-like superfamily protein (.1) AT3G06770 355 / 2e-118 Pectin lyase-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028766 [exp] 691 / 0 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 690 / 0 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 577 / 0 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 575 / 0 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 438 / 9e-151 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 397 / 2e-134 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 396 / 4e-134 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 384 / 8e-130 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 380 / 3e-128 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162400 [exp] 783 / 0 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 696 / 0 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 684 / 0 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 623 / 0 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G073900 [exp] 605 / 0 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 450 / 1e-155 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 439 / 4e-151 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 399 / 1e-135 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 395 / 3e-134 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 389 / 4e-132 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10007922 pacid=23143186 polypeptide=Lus10007922 locus=Lus10007922.g ID=Lus10007922.BGIv1.0 annot-version=v1.0 ATGGAGAAGATTAAGGGAGTTTCTTCAATGCTTCTTCTAGCGGTAACAGTCATGGCGGCGGCACTAGCTGGATCAGCGGAGAGCAGGAAAGCAAGAAGGG TAGTTGACTCCTTCGAGTACACTGCAATGAGCTGCAGAGCTCACACAGCTTCCGTAACAGAGTTCGGAGCAGTTGGGGATGGAAATACATCAAACACAAA GGCCTTTCAAGACGCCATTGATCATTTAGGCCAGTTTTCCGACGGTGGTGGGTCCCAGCTCTATGTCCCCGCCGGAAAATGGCTCACCGGAAGTTTTTCC CTCGTCAGCCATTTCACTCTGTTTTTGCATAAGGATGCCGTTCTTCTCGCTTCCCAGGACATGAAGGAATGGCCGGTGCTGAAAGCTCTGCCGTCGTACG GTAGAGGAAGGGATGCCGCCGCCGGGAGATATGCTAGTCTTATATTTGGAACCAATCTCACTGATGTTATTATTACAGGGGAGAATGGAACAATAGACGG GCAAGGAGCATACTGGTGGCAGCAGTTCCACAAGAGCAAGCTCAAGTACACTCGCCCTTACTTGATTGAGTTGATGTTCTCCGATGGCATCCAGATTTCC AATCTTACCCTCCTCAACTCTCCCTCCTGGAACGTTCACCCTGTTTACAGCAGCAATATTTTGGTGAAAGGAATCACAATCTTAGCTCCGGTCACTTCTC CAAATACCGATGGCATCAATCCAGATTCCTGCACCAACACCCGAATCGAGGACTGCTACATAGTCTCCGGCGACGACTGCGTGGCCGTGAAAAGCGGATG GGACGAGTACGGAATCGCGTTCGGGATGCCGACGAGGCAGCTAATCATACGGCGGCTCACCTGCGTCTCGCCTTACAGCGCCACCATCGCACTCGGCAGT GAGATGTCCGGCGGGATCCAGGACGTGAGGGCGGAGGACATCACCGCCGTGCACACGGAGTCCGGCGTCAGAATCAAGACCGGCGTCGGCCGAGGAGGCT TCGTGAAGGACATCTACGTCAGAAGGATGACGATGCACACGATGAAGTGGGCCTTCTGGATGACCGGGAATTACGGATCACACGCCGACGGGAATTACGA CCCCAACGCCCTCCCCGAAATCAAGAACATCAACTACAGGGACATGACGGCAGAGAACGTGTCGATGGCGGCGAGGCTGGAGGGGATCTCCGGAGATCCA TTCACGCAGATCTGCATATCGAATGTGACGATTGCGATGGCGGCGAAGGCGAAGAAGGTGCCGTGGACTTGTACGGATGTGGGAGGGATCACGAGCGGGG TGAGTCCCCGGCCTTGCGATCTGCTGCCGGATCAAGGGGAGGGGAAAATGGCGACCGGGTGTGATTATCCGACGGATAGTTTGCCGATCGATATGGTTGA GCTGAAAACTTGCTCTTCTAAGATTGGTTACATCAAGTGA
AA sequence Show only first row Show all	>Lus10007922 pacid=23143186 polypeptide=Lus10007922 locus=Lus10007922.g ID=Lus10007922.BGIv1.0 annot-version=v1.0 MEKIKGVSSMLLLAVTVMAAALAGSAESRKARRVVDSFEYTAMSCRAHTASVTEFGAVGDGNTSNTKAFQDAIDHLGQFSDGGGSQLYVPAGKWLTGSFS LVSHFTLFLHKDAVLLASQDMKEWPVLKALPSYGRGRDAAAGRYASLIFGTNLTDVIITGENGTIDGQGAYWWQQFHKSKLKYTRPYLIELMFSDGIQIS NLTLLNSPSWNVHPVYSSNILVKGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTRQLIIRRLTCVSPYSATIALGS EMSGGIQDVRAEDITAVHTESGVRIKTGVGRGGFVKDIYVRRMTMHTMKWAFWMTGNYGSHADGNYDPNALPEIKNINYRDMTAENVSMAARLEGISGDP FTQICISNVTIAMAAKAKKVPWTCTDVGGITSGVSPRPCDLLPDQGEGKMATGCDYPTDSLPIDMVELKTCSSKIGYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	0	1
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	1.4	0.8844
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	2.0	0.8541
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	2.4	0.8698
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	2.4	0.8412
AT1G48100			Pectin lyase-like superfamily ...		Lus10017109 [exp]	7.7	0.8449
					Lus10027544 [exp]	8.1	0.7731
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	8.4	0.7936
AT1G48100			Pectin lyase-like superfamily ...		Lus10037834 [exp]	9.0	0.8586
AT5G57770			Plant protein of unknown funct...		Lus10019972 [exp]	10.5	0.6781
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	10.8	0.7857

Compare expression of checked genes

Lus10007922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.