Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11350 392 / 5e-133 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 381 / 2e-128 Protein of unknown function (DUF604) (.1) AT5G41460 361 / 1e-120 Protein of unknown function (DUF604) (.1) AT1G01570 346 / 3e-115 Protein of unknown function (DUF604) (.1) AT1G07850 347 / 7e-115 Protein of unknown function (DUF604) (.1) AT4G00300 275 / 7e-85 fringe-related protein (.1.2) AT2G37730 266 / 1e-83 Protein of unknown function (DUF604) (.1) AT4G15240 215 / 1e-64 Protein of unknown function (DUF604) (.1) AT3G11420 212 / 2e-63 Protein of unknown function (DUF604) (.1) AT1G33250 210 / 5e-62 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036382 [exp] 545 / 0 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10017514 [exp] 389 / 1e-131 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 385 / 7e-130 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 344 / 6e-114 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10024662 [exp] 325 / 4e-110 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10028769 [exp] 257 / 4e-84 AT4G23490 370 / 1e-127 Protein of unknown function (DUF604) (.1) Lus10002713 [exp] 228 / 2e-69 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10030153 [exp] 209 / 7e-65 AT2G37730 305 / 6e-101 Protein of unknown function (DUF604) (.1) Lus10033262 [exp] 211 / 3e-64 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131400 [exp] 392 / 1e-132 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 386 / 2e-130 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 353 / 6e-118 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 349 / 2e-116 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 258 / 9e-81 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 229 / 8e-70 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 228 / 2e-69 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 224 / 9e-68 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 213 / 4e-64 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 210 / 4e-62 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10007923 pacid=23143184 polypeptide=Lus10007923 locus=Lus10007923.g ID=Lus10007923.BGIv1.0 annot-version=v1.0 ATGAAGCAAAATACCAAAGCAGCGGACGCGGAAAATCCGGTGTGGTTGAAATCCACCGTCATCACTTGCTCCCTCTCCAAATTAACAATCTCTTCCCTCT GCCTCCTAATTTCCCTCCCTTACCTTATCTATTACCTCCAATTCCCTTACTGCAACCTCCGATCCTCATCGGATTCCCTTGCTACAACCTCCCATCATCA AATCCCCCTCGAGAATCACACTTCCGTCACTCCCCCTCCTCCGCCGAGGCTCAAAACTTCCCTCAACCACATAGTCTTCGGAATCGCCGCCTCATCCGGC CTGTGGGACCGCCGCAAGGAGTACATCAAACTATGGTACCTCCCCTACCAGATGCGCGGCTTCGTCTGGATCGACAAGCCTCCGCCGCCTCCGGCCGGCG GCATAGGGAGTAACTCGGAGAGCCATTTACAGAACATAATGTTCTCGTACGCGATGGCGTACGGCGGCGGGGGATTTGCGAACAGCTACCCGTTGGCGGT GGCGCTGTCGAGGATGCAGGATCGGTGTTTCGCTATGTACCCGGGATTGTACGGCTCGGATGATCGGATACAGGCTTGTATGGCTGAGATTGGAGTTCCT CTTACCAAAGAGCCTGGCTTCCACCAGCTTGACGTGTACGGAAACGCATTCGGGTTACTAGCAGCACACCCAGTAACACCGTTAGTCTCCCTCCACCACA TAGACGTCATCGAGCCAATCTTCCCGAAAGCCACCCGCCTCCAGTCCCTCCAGCGGCTAGCACAGCCGCGGTGGCTCCGCCCCCCGGGCCTGTGGCGGCC CACCCGCCAGTCCATCTGCTATGACCACAAACGCCGCTGGATGGTCTCCGTTTCCTGGGGCTACGCCGTCCAAATCATCCGGGGAACCGTCTCTCCCCGA GAGATGGAGATGCCCGTCCGAACCTTCGTCAACTGGCATAAGAAGGCAGATTACAGGGGATATGCTTTCAATACCCGACCCGTACCCAGAGACCACTGCC GGGTGCCGTTTGTGTATACTCTATCGGACGCCGTTTACGAGCCGAAGACCGGGAAGACGGCGAGCGAGTATGTCCGGCACCGGATGGACGCCCCCGCCAC CAAGTGTAACTGGAGGAGGTTTTCGGATCCCGAGAAGATTGATCGAGTTGAGGTTTACAAGACGCCCGACCCGGATTTGTGGGCCAAGGCTCCTCGGAGA AACTGTTGCAGAGTTTTGCCGGATTCGAAGAAGAAGAAGAAAACGGTGATGATTGATGTCGGAGAGTGTAGAGAAAATGAAACTATGGAAATGCGATGA
AA sequence Show only first row Show all	>Lus10007923 pacid=23143184 polypeptide=Lus10007923 locus=Lus10007923.g ID=Lus10007923.BGIv1.0 annot-version=v1.0 MKQNTKAADAENPVWLKSTVITCSLSKLTISSLCLLISLPYLIYYLQFPYCNLRSSSDSLATTSHHQIPLENHTSVTPPPPPRLKTSLNHIVFGIAASSG LWDRRKEYIKLWYLPYQMRGFVWIDKPPPPPAGGIGSNSESHLQNIMFSYAMAYGGGGFANSYPLAVALSRMQDRCFAMYPGLYGSDDRIQACMAEIGVP LTKEPGFHQLDVYGNAFGLLAAHPVTPLVSLHHIDVIEPIFPKATRLQSLQRLAQPRWLRPPGLWRPTRQSICYDHKRRWMVSVSWGYAVQIIRGTVSPR EMEMPVRTFVNWHKKADYRGYAFNTRPVPRDHCRVPFVYTLSDAVYEPKTGKTASEYVRHRMDAPATKCNWRRFSDPEKIDRVEVYKTPDPDLWAKAPRR NCCRVLPDSKKKKKTVMIDVGECRENETMEMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	0	1
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	4.0	0.8303
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	6.5	0.8417
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	7.3	0.7985
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	13.2	0.8018
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10023561 [exp]	13.5	0.8008
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	13.7	0.8081
AT4G28230			unknown protein		Lus10033724 [exp]	14.7	0.7987
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	15.7	0.8040
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10042023 [exp]	15.9	0.7910
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	19.5	0.7943

Compare expression of checked genes

Lus10007923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.