Plant FIBer expression Database

Lus10007924 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26030 615 / 0 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2)
AT2G30390 480 / 8e-166 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024237
[exp]
780 / 0 AT5G26030 650 / 0.0 ferrochelatase 1 (.1.2)
Lus10023607
[exp]
769 / 0 AT5G26030 652 / 0.0 ferrochelatase 1 (.1.2)
Lus10013461
[exp]
605 / 0 AT5G26030 473 / 1e-165 ferrochelatase 1 (.1.2)
Lus10019224
[exp]
476 / 6e-164 AT2G30390 729 / 0.0 ferrochelatase 2 (.1.2)
Lus10004292
[exp]
461 / 2e-158 AT2G30390 713 / 0.0 ferrochelatase 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G232100
[exp]
648 / 0 AT5G26030 620 / 0.0 ferrochelatase 1 (.1.2)
Potri.T010901
[exp]
489 / 5e-169 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2)
Potri.T010900
[exp]
489 / 5e-169 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2)
Potri.004G138400
[exp]
488 / 8e-169 AT2G30390 747 / 0.0 ferrochelatase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0043 Chelatase PF00762 Ferrochelatase Ferrochelatase
Representative CDS sequence
>Lus10007924 pacid=23162336 polypeptide=Lus10007924 locus=Lus10007924.g ID=Lus10007924.BGIv1.0 annot-version=v1.0
ATGGCCTTCGATTTATGGGCAAAAGTAATTCGGTTGCGCCTAAAACTCGGACCAACGGAAAATCCGGTTCAAGCTCACAACCTTCTAAAACCACTAGACT
ACGTCGTATACGACGTCTTTATCACCACCGGTGAACTCTTCCAAGGCAGCGACCGTTTCTACTCCATCTTCGCCGGCGACAAAGCTATGGAATCAGCTTC
TGTCTCCGCCGCTCTTCCCCTGACCAAATTCTCCGTCTCCAGGTTGTGTTCTAAGATCGGATCAGCTCAATCCGTATCTTACCTCTCGTATGCACCATTA
AAAAAACCTCATGATAATCCGTCAACTCTGGTATTAAGTGCGAGTTCTTTCGATGAGTTAACCTCCATTAACGCGGGAGGTTTAGCTCGGAAACGGAATG
TTATTACTCAATCAAATGTTGGTATCTGCCCCTTCTACGAGACATCAGCAGGTCAGAATCATACCACAACCACTGAAGAGAAGATCGGTGTGCTGCTACT
TAATCTTGGAGGGCCAGAAAAGCTTAATGATGTCCAGCCATTTCTGTTCAATTTGTTTGCAGATCCAGATATCATTCGATTACCTAGGCTGTTCAGGTTT
CTTCAGAGGCCGTTGGCTCAGTTGATTTCCACTCTCCGTGCACCTAAGAGTAAAGAAGCGTATGCTTCTATTGGCGGTGGCTCGCCTCTGCGTAAAATCA
CTGACGAGCAGGCGTATGCTATCAAGGATGCTTTACAAGCAAAGGATGTAAGCGCAAATGTCTACGTTGGAATGCGGTACTGGTACCCTTTCACTGAGGA
GGCAATTCAGCAGATCAAGAAGGATAGGATAACAAAGCTTGTTGTGCTGCCACTTTATCCACAGTTTTCTATATCTACAACTGGTTCCAGTCTCCGCGTT
CTCCAGAATATATTCAGTGAGGATGCATATCTGTCAAGGCTTCCTGTTTCAATCATACAGTCATGGTATCAACGACAAGGCTATGTAAAATCCATGGCCG
ATTTGATAGAGGAGGAGTTGCAGACATTTTCCAAGCCTGCTGAAGTAGTTGTCTTCTTTAGTGCTCATGGAGTGCCAGTCAGTTATGTGGAAGAAGCAGG
AGATCCGTACAGAGATCAGATGGAGGATTGCATTTACTTGATAATGCAAGAGCTCAAGGCAAGGGGAGTTCACAATGATCATACTCTTGCTTACCAGAGC
CGAGTCGGACCAGTGCAGTGGTTGAAGCCCTATACTGATGAGGTCCTTGTGGAGCTTGGGAAGAAAGGGGTGAAAAGCCTCTTAGCAGTCCCGGTTAGCT
TTGTAAGTGAGCACATAGAAACACTCGAAGAAATCGACATGGAGTACAGGGAACTCGCGCTCGAATCCGGGATCGAGAACTGGGGGCGCGTACCTGCATT
GGGGTGCACCACGTCCTTCATCGCTGACCTGGCAGACGCAGTTGTCGAAGCCTTACCATCAGCCAAAGCGATTGTAGCCACCTCCTCAAGTCGTGACGAT
GCAGAAAAATCTGACGATTCTGACCCCTTCCGGTATGCAATCAGGTTGTTATTCGGTTCGGTTCTAGCCTTCGTGCTGCTGCTCTTCTCCCCGAAGATGT
TCGTGGCTTTCCTTAACCAGTAG
AA sequence
>Lus10007924 pacid=23162336 polypeptide=Lus10007924 locus=Lus10007924.g ID=Lus10007924.BGIv1.0 annot-version=v1.0
MAFDLWAKVIRLRLKLGPTENPVQAHNLLKPLDYVVYDVFITTGELFQGSDRFYSIFAGDKAMESASVSAALPLTKFSVSRLCSKIGSAQSVSYLSYAPL
KKPHDNPSTLVLSASSFDELTSINAGGLARKRNVITQSNVGICPFYETSAGQNHTTTTEEKIGVLLLNLGGPEKLNDVQPFLFNLFADPDIIRLPRLFRF
LQRPLAQLISTLRAPKSKEAYASIGGGSPLRKITDEQAYAIKDALQAKDVSANVYVGMRYWYPFTEEAIQQIKKDRITKLVVLPLYPQFSISTTGSSLRV
LQNIFSEDAYLSRLPVSIIQSWYQRQGYVKSMADLIEEELQTFSKPAEVVVFFSAHGVPVSYVEEAGDPYRDQMEDCIYLIMQELKARGVHNDHTLAYQS
RVGPVQWLKPYTDEVLVELGKKGVKSLLAVPVSFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCTTSFIADLADAVVEALPSAKAIVATSSSRDD
AEKSDDSDPFRYAIRLLFGSVLAFVLLLFSPKMFVAFLNQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G26030 FC1, FC-I, ATFC... ferrochelatase 1 (.1.2) Lus10007924
[exp]
0 1
AT3G63150 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-... Lus10022034
[exp]
7.1 0.6879
AT4G20300 Protein of unknown function (D... Lus10036240
[exp]
8.2 0.6905
Lus10024018
[exp]
11.0 0.6146
AT1G16590 REV7, ATREV7 DNA-binding HORMA family prote... Lus10006836
[exp]
16.0 0.6500
AT5G62810 ATPEX14, PED2, ... PEROXISOME DEFECTIVE 2, peroxi... Lus10027672
[exp]
17.5 0.6573
AT1G17980 PAPS1 poly(A) polymerase 1 (.1), pol... Lus10034723
[exp]
19.1 0.6629
AT5G65000 Nucleotide-sugar transporter f... Lus10026182
[exp]
21.4 0.6541
AT5G07240 IQD24 IQ-domain 24 (.1) Lus10005760
[exp]
27.3 0.6284
AT5G18610 Protein kinase superfamily pro... Lus10040350
[exp]
32.2 0.6476
AT3G28860 ABCB19, ATMDR11... P-GLYCOPROTEIN 19, MULTIDRUG R... Lus10008139
[exp]
38.0 0.6513

Lus10007924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.