Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01490 423 / 6e-151 phytanoyl-CoA dioxygenase (PhyH) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013462 [exp] 545 / 0 AT2G01490 452 / 2e-162 phytanoyl-CoA dioxygenase (PhyH) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222800 [exp] 464 / 4e-167 AT2G01490 441 / 3e-158 phytanoyl-CoA dioxygenase (PhyH) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF05721 [flax] [poplar] PhyH Phytanoyl-CoA dioxygenase (PhyH)
Representative CDS sequence Show only first row Show all	>Lus10007925 pacid=23162330 polypeptide=Lus10007925 locus=Lus10007925.g ID=Lus10007925.BGIv1.0 annot-version=v1.0 ATGGGAATCGCCAGGGAACTAACCGCCGATCAGCTCAGCTTTTTCAATTCCAACGGTTACCTCGTGGTTGAATCGTTCGCCAGCTCCGATGAAATCGAAT CCATGAGGAAGAGAATGGACCAGCTGCTCGACGATTTCGACTGCTCCTCTTCCTCAGTCTTCTCCACCAAAAACCAACAAAAGGTAACAGATGATTACTT CTATGATAGCGCTGAGAAGATATCTTTCTTCTTCGAAGAGAAGGCATTTGATGATGGAGGGAACTTGAAGCAGCCTAAGGAACTTTCGATAAACAAAGTC GGCCATGCCTTGCATGAGCTTGATCCGGTGTTCAAGAAGTTCTCTTGCTCCGATCGAGTTTCGAGTTTGTTGCTCTCCTTGGGGTACAAGAGGCCGGCCA TCGTTCAGTCCATGTACATCTTCAAGCAACCAGGTATTGGGGGTGAAGTTGTGCCGCACCAGGACAACTCATTTCTCTACACTGAACCAACCACTTGCAC CGGCCTGTGGGTGGCGCTCGAAGATGCAACGGCTATCAACGGGTGCCTCTGGGCTATTCCTGGATCTCATAAAAATGGGCTCGTGAGGAGATTCATTCGA GGGGAACAAGGGGTGTCGTTTGATCGGCCGTCGCCTTCTTATAACCAGTCGGATTTCGTACCTGTTGAAGTGAAAGCCGGCTCTTTGGTCTTGATTCATG GTGATCTCATTCATCAAAGTTTCGAGAATCAGTCTCCAAACTCAAGGCATGCTTACAGCGTGCACGCTGTGGATACCGATGGTTGCAAATGGGCGCCTGA CAATTGGATTCGAAGGAAAGTTGATCCCGAGCCACTCTACTCACCAGCTTGA
AA sequence Show only first row Show all	>Lus10007925 pacid=23162330 polypeptide=Lus10007925 locus=Lus10007925.g ID=Lus10007925.BGIv1.0 annot-version=v1.0 MGIARELTADQLSFFNSNGYLVVESFASSDEIESMRKRMDQLLDDFDCSSSSVFSTKNQQKVTDDYFYDSAEKISFFFEEKAFDDGGNLKQPKELSINKV GHALHELDPVFKKFSCSDRVSSLLLSLGYKRPAIVQSMYIFKQPGIGGEVVPHQDNSFLYTEPTTCTGLWVALEDATAINGCLWAIPGSHKNGLVRRFIR GEQGVSFDRPSPSYNQSDFVPVEVKAGSLVLIHGDLIHQSFENQSPNSRHAYSVHAVDTDGCKWAPDNWIRRKVDPEPLYSPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	0	1
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	1.4	0.9549
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	2.0	0.9351
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	2.2	0.9346
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	3.5	0.9462
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	3.6	0.9185
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	5.2	0.9410
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	6.9	0.9304
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	7.0	0.9319
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	7.1	0.9239
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	7.9	0.9286

Compare expression of checked genes

Lus10007925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.