Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02360 169 / 3e-51 ATPP2-B10 phloem protein 2-B10 (.1) AT1G56250 150 / 8e-44 ATPP2-B14 phloem protein 2-B14 (.1) AT1G56240 148 / 6e-43 ATPP2-B13 phloem protein 2-B13 (.1) AT1G09155 145 / 7e-42 ATPP2-B15 phloem protein 2-B15 (.1) AT2G02250 145 / 1e-41 ATPP2-B2 phloem protein 2-B2 (.1) AT5G24560 141 / 1e-40 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02340 142 / 2e-40 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02240 137 / 3e-38 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02230 134 / 3e-37 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02310 133 / 4e-37 ATPP2-B6 phloem protein 2-B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013463 [exp] 481 / 4e-172 AT2G02360 188 / 3e-57 phloem protein 2-B10 (.1) Lus10020674 [exp] 157 / 3e-46 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 155 / 1e-45 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 150 / 1e-43 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10023207 [exp] 148 / 1e-42 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10008898 [exp] 147 / 1e-42 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10015208 [exp] 143 / 8e-41 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 144 / 1e-40 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10029674 [exp] 137 / 2e-38 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 154 / 4e-45 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016000 [exp] 153 / 8e-45 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 149 / 7e-43 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 147 / 1e-42 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G015800 [exp] 145 / 1e-41 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 139 / 2e-39 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.013G012600 [exp] 134 / 1e-37 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 132 / 5e-37 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.006G117600 [exp] 87 / 9e-20 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.012G136200 [exp] 82 / 5e-18 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10007926 pacid=23162337 polypeptide=Lus10007926 locus=Lus10007926.g ID=Lus10007926.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAAATGCAGGTGGAGTACGCGATACGATCTTTGACGATCTTCCGGAGGGATGCGTTGTGAAAATCCTGTCGTTCGTCACTCCGGTCGATG CCTGCAGATCATCCTCCGTCTCTTCGTTCTTTAGATCCGCTGCCAGCTCCGATGCCTTGTGGGAGGCGTTCCTGCCTTCGGATTACAAGTCAGTGCTCTC CAATTTTGCCGCTGATCTCCCGCCTTTCTCTTCGAAGAAGGAGCTCTTCCGTACGCTCTGCAGTCCGATCATCTACGATGATGACAAGAAGAGTTTTTGG CTGGACAAAATGACTGGCTACAAGAGTTACATGCTTGCTGCTAGAGGTCTCTCCATTGAGTCAGCTGATAATCCTCAGAATTGGAGTTGGATTAAACACG ATCATTCCAGATTCCCTGAGGTGGCCAAGCTTAGATCCGTCCCTACCCTCGACATCCGTGGCGAAATTACTACTCCGATGCTGTCCCCTGAATTTACCTA TGCAGCATATCTTGTCTACAAGTTCCATGGAAATGCATTCAACTGCCTTACGGTGAACACTTCCATAGGTGTTACGGAAGTTGACATTGCTTCCCCCACA GTTTGTCTGACTCCTGACGCAGAACCTTGGCACACTCATCGACGCGACAATGGCCTGCTGAAAACGAGACGCCCAAAGGTCAGGAAAGATGGATGGAGGG AGATTGAGCTCGGGAAGTATCGGAACAAGGATACCAGGAGTGGCGGATCGGAGCTGGTTTCCATCAAAGTGAATCGCGGTCAAGAAACCCGGGGTCATCT CATCATTCATGGAATGGAGCTCAGGCCTACAATAGGTCAGTGA
AA sequence Show only first row Show all	>Lus10007926 pacid=23162337 polypeptide=Lus10007926 locus=Lus10007926.g ID=Lus10007926.BGIv1.0 annot-version=v1.0 MEGGNAGGVRDTIFDDLPEGCVVKILSFVTPVDACRSSSVSSFFRSAASSDALWEAFLPSDYKSVLSNFAADLPPFSSKKELFRTLCSPIIYDDDKKSFW LDKMTGYKSYMLAARGLSIESADNPQNWSWIKHDHSRFPEVAKLRSVPTLDIRGEITTPMLSPEFTYAAYLVYKFHGNAFNCLTVNTSIGVTEVDIASPT VCLTPDAEPWHTHRRDNGLLKTRRPKVRKDGWREIELGKYRNKDTRSGGSELVSIKVNRGQETRGHLIIHGMELRPTIGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10007926 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10041244 [exp]	1.4	0.8536
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	6.0	0.8426
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	7.5	0.8345
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	11.2	0.8283
AT3G48860			unknown protein		Lus10032546 [exp]	12.2	0.8317
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	12.3	0.8141
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	12.4	0.7921
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	14.3	0.8095
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	15.2	0.8311
AT4G24880			unknown protein		Lus10029244 [exp]	22.2	0.7168

Compare expression of checked genes

Lus10007926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.