Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23110 332 / 1e-115 unknown protein AT1G70900 322 / 1e-111 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013464 [exp] 323 / 3e-112 AT1G23110 174 / 3e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111300 [exp] 365 / 2e-128 AT1G23110 385 / 7e-137 unknown protein Potri.008G130700 [exp] 338 / 6e-118 AT1G70900 361 / 2e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007928 pacid=23162326 polypeptide=Lus10007928 locus=Lus10007928.g ID=Lus10007928.BGIv1.0 annot-version=v1.0 ATGAGTCCCACGAACACTACAAATTCCAGTACAGCTTTGGAATGTGTTCATGGGATTCATGTTATACCACAATCGCCTTTCCGTCTTGAGGTGATTACTC AACATGCAGCCTTCCCTCAATCTCACTGTGAAACCTCAACTCAATATGCAGCCAATCAGCCGTCCATGTTCTGGAAATTATGGGAGCAAAGACCAGGATG CCTGCGGCCTATCAAGTGTTGCGTTCACGGTGAAAACTTATCGGAAACAGTTGCGAACGTGTTGACATCACTTCCGTTTGTTGCTCTGGGTGTGCAGGCT CCTAGAAAGGATCTGAACACCAAACTGTATGCTAACTCGTTAATCGGGGTTGGAGTCGCATCGAGTTTGTACCATTCATCGAGGGGGAGAGTGAGGAAGT ACTTGAGGTGGCTTGACTATGCAATGATAGCAGCTACAACTGTGGTAATTTCCAATCATACTAGGCTTTTCGTTTCCGGGAATTATGCTTGCAGGACTAG TTGGCCTAGTCGGTATACTGACCAAACTACGCTCGTTTCGCAGTGTTTATCAAGAGCCTTGAGAGACGAGCATCCGAAGCTGTTGATGGCTGCATCAGCT GCATTACTGCCTATCCAACCACTGATGGTGTCTGCACTTCACACAGGAATGATGGAGGTGGCATTTGCCAAAAGAGCACTGGAAAATCCGGAGCTGAGGA CCGTACATACCATGCATAAGATGTCTTCCTTGATTGGAGGTGCTCTCTTCATTGCAGACGATCTGTTACCGGAGACTCCATATCTCCACGCCGGTTGGCA TCTTGCTGCTGCCGTTGGAGTAGGTACCTGCCACAAGCTCCTTGAGTAG
AA sequence Show only first row Show all	>Lus10007928 pacid=23162326 polypeptide=Lus10007928 locus=Lus10007928.g ID=Lus10007928.BGIv1.0 annot-version=v1.0 MSPTNTTNSSTALECVHGIHVIPQSPFRLEVITQHAAFPQSHCETSTQYAANQPSMFWKLWEQRPGCLRPIKCCVHGENLSETVANVLTSLPFVALGVQA PRKDLNTKLYANSLIGVGVASSLYHSSRGRVRKYLRWLDYAMIAATTVVISNHTRLFVSGNYACRTSWPSRYTDQTTLVSQCLSRALRDEHPKLLMAASA ALLPIQPLMVSALHTGMMEVAFAKRALENPELRTVHTMHKMSSLIGGALFIADDLLPETPYLHAGWHLAAAVGVGTCHKLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23110			unknown protein		Lus10007928 [exp]	0	1
AT1G23110			unknown protein		Lus10013464 [exp]	1.0	0.9268
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	3.5	0.8829
AT5G49600			Protein of unknown function, D...		Lus10037804 [exp]	3.9	0.8600
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	4.6	0.8657
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10008048 [exp]	4.9	0.7934
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10002499 [exp]	7.3	0.7716
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	7.7	0.8603
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	9.5	0.8584
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	10.2	0.8572
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10004832 [exp]	12.3	0.7708

Compare expression of checked genes

Lus10007928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.