Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01630 730 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 669 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 585 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 461 / 1e-159 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT5G56590 345 / 5e-114 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 345 / 6e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 338 / 8e-112 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 333 / 5e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 330 / 6e-109 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 309 / 2e-100 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013465 [exp] 930 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 796 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 707 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 700 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 547 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 482 / 2e-167 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 465 / 2e-161 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10012937 [exp] 343 / 2e-114 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10015151 [exp] 339 / 4e-112 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108500 [exp] 809 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 788 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 735 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 734 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G006100 [exp] 579 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 572 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 466 / 9e-162 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 463 / 1e-160 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 365 / 7e-122 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 332 / 2e-109 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10007929 pacid=23162329 polypeptide=Lus10007929 locus=Lus10007929.g ID=Lus10007929.BGIv1.0 annot-version=v1.0 ATGCCGAGCCCAACTCAAGTGGTGGCTCTTCTGAAGGCTCAAAATATCCGACATGTCAGGCTCTACGATGCAGACAGGGCAATGCTTATAGCACTTGCCA ATACAGGAATCCATGTTACTGTTTCTGTACCGAATGATCAGATCCTTGGGATTGGTCAGTCGAATGCTACAGCAGCCAACTGGGTGTCTCGTAACATAAT AGCTCATGTTCCTCCGACAAACATTACAGCTATAGCAGTTGGGTCAGAAGTCCTTACCACTCTTCCAAATGCAGCCCCGGTCTTAGTCTCTGCCTTAAAG TTCATCTATTCTGCCCTCGTTGCAGCGAATCTCGACGGTCAGATCAAAGTCTCTACCCCACATTCCTCTTCCATCATCCTTGACTCTTTCCCTCCCTCCC AGGCCTTCTTCAACAGAACATGGAACCCGGTAATGGTTCCTTTGCTCAAGTTTCTGCAGTCCGCGGGGTCCCCCCTGATGCTAAATGTGTACCCGTACTA TGATTACATGCAAACAAACGGTGTAATCCCATTGGACTATGCTCTTTTTCGTCCCCTCCAACCGAACAAAGAAGCTGTGGACTCCAACACTCTTCTCCAC TACACCAACGTGTTCGATGCTCTGGTTGATGCAGCCTATTTTGCAATGTCGGAACTGAACTTCACCAATGTTCCAGTAGTGGTTACCGAGACAGGTTGGC CTTCAAAGGGCGATTCCTCTGAGCCGGATGCCACAGCTGATAACGCCAACACTTATAACAGCAACTTGATCAGACATGTGATGAACAACACTGGCACACC TAAGCATCCCGGGATTGCAATCAGCACTTTCATTTACGAGCTCTACAACGAGGACACCAGACCTGGGGCGGTATCCGAAAAGAACTGGGGGCTCTTTGAT GCCAATGGAGTTCCAATCTATATCTTACACTTGACAGGTGCTGGTACTGTGTTGGCAAATGATACCACGAATCAAACCTTCTGCGTTGCAAAGGAAGGCG CGGACCGAAAGATGTTGCAGGCAGCCCTAGACTGGGCTTGTGGACCGGGGAGAGTTGATTGCTCGCCGATGCTTCAAGGAGAACCGTGTTACGAGCCAGA TAACGTGATTGCTCACGCAACGTTTGCTTTCAATGCCTATTATCAACGGATGGCTAAGTTTCCTGGGACGTGTGATTTCAAAGGCGTGGCAGCGGTCACC AGTACTGATCCAAGTCATGGTTCGTGTATAGTCCCCGGAAGTGCTAGAGGAAATGAAACCTTCACGAATACGACAGCCCTGGCTCCGTCCTCAAACTCTA CGACTACCTCAGGTTGTCCTGTACTGTACTTCGCCCCCTTTCGTGCCGGTTCTTTCGTGACTATGTGCATTTTGCTGGTGAGCATTGTATTGTAG
AA sequence Show only first row Show all	>Lus10007929 pacid=23162329 polypeptide=Lus10007929 locus=Lus10007929.g ID=Lus10007929.BGIv1.0 annot-version=v1.0 MPSPTQVVALLKAQNIRHVRLYDADRAMLIALANTGIHVTVSVPNDQILGIGQSNATAANWVSRNIIAHVPPTNITAIAVGSEVLTTLPNAAPVLVSALK FIYSALVAANLDGQIKVSTPHSSSIILDSFPPSQAFFNRTWNPVMVPLLKFLQSAGSPLMLNVYPYYDYMQTNGVIPLDYALFRPLQPNKEAVDSNTLLH YTNVFDALVDAAYFAMSELNFTNVPVVVTETGWPSKGDSSEPDATADNANTYNSNLIRHVMNNTGTPKHPGIAISTFIYELYNEDTRPGAVSEKNWGLFD ANGVPIYILHLTGAGTVLANDTTNQTFCVAKEGADRKMLQAALDWACGPGRVDCSPMLQGEPCYEPDNVIAHATFAFNAYYQRMAKFPGTCDFKGVAAVT STDPSHGSCIVPGSARGNETFTNTTALAPSSNSTTTSGCPVLYFAPFRAGSFVTMCILLVSIVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10007929 [exp]	0	1
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	5.7	0.8983
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019274 [exp]	5.8	0.8877
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039305 [exp]	9.8	0.8622
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	15.9	0.8874
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	16.7	0.8868
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10001520 [exp]	19.4	0.8570
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	19.6	0.8779
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	20.8	0.8649
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10000395 [exp]	24.3	0.8407
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10019258 [exp]	25.3	0.8194

Compare expression of checked genes

Lus10007929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.