Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01620 155 / 3e-45 MEE11 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) AT3G26000 93 / 6e-21 Ribonuclease inhibitor (.1) AT3G27290 76 / 2e-15 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013466 [exp] 455 / 8e-163 AT2G01620 174 / 6e-53 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Lus10037060 [exp] 97 / 3e-22 AT3G26000 337 / 6e-112 Ribonuclease inhibitor (.1) Lus10006438 [exp] 94 / 6e-21 AT3G26000 240 / 1e-73 Ribonuclease inhibitor (.1) Lus10011378 [exp] 45 / 1e-05 AT3G26000 78 / 3e-17 Ribonuclease inhibitor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108600 [exp] 202 / 6e-63 AT2G01620 209 / 8e-66 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Potri.010G054600 [exp] 117 / 8e-30 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1) Potri.008G179800 [exp] 108 / 2e-26 AT3G26000 330 / 1e-109 Ribonuclease inhibitor (.1) Potri.001G337300 [exp] 99 / 3e-23 AT3G26000 252 / 3e-79 Ribonuclease inhibitor (.1) Potri.008G133100 [exp] 71 / 3e-15 AT2G01620 68 / 2e-14 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Potri.011G066700 [exp] 43 / 0.0003 AT2G42620 717 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007930 pacid=23162308 polypeptide=Lus10007930 locus=Lus10007930.g ID=Lus10007930.BGIv1.0 annot-version=v1.0 ATGGCCGCCGATCACCAACCACCGGCGCCGCCGACGGACACAACTACAACCACCACCGAATCATCATCATCATCATCAGCCGGTCCGCCGCACGAAGCTC TGTTCCTCGTCCTGCCATACCTGTACGTACTCGAGCTTCTCTCGATCTCCAGCGCAGGCTCCCAGCTTCGCGCGGCGGTGGCGGACGACGTTCTCCCGTG GCTGGACTTGATAGTTGAAAGCCCTCTGAACCGGCGGTTGTCCGATCAGAGCCTGATCGGACTTGCGGCGAGAGGGAACAGCAGATTGAGGAGTTTGACT CTGGTGGATTGCTTCAACGTCACCGACGACGGTCTCCTGTCGGTCATTTCCGATAACCCGCTCATCACCAAGTTGCACGTACCAGGATGCTGGAGGCTAA CACCAGAAGGAATCATAAGAGCAGTGAAGAAATTATCCGAAAACCGAGCCTCGACCGGATTGACTAGTCTTGAGATAAACAACATCCACGAAATCAGCAA GCAACACTACCACACACTCTGCTCTTACATTGAGCAGCAAGGCACTACTTACCACATCGACGTCGAGATCTGCCCAATGTGCGACCAAGTGCGACGAGTC TACGAATGCCCCAGGCCGGAAAATGAAGAACACGAACACTCCGGTTGCAGAAGGAGGGGGTGCGAGTTCTGTGTGGCGCGGTGCGCAGAATGCAGGATGT GTGCTCGGTGTGTGGACGAAGAGATTCTGGACGAGGAGGCTAGCCTCTGTGCTGAAGTCTGGTGCTCGAAATGTTGGCTGCTCCTTTCGAAATGTGATCA TTGTAATAAACCTTACTGTGCACGACATGCTGACCGGATGCACTGGGGGAAAGTAGGTCGAGGATGGCTTTGCGAGGATTGTCATGTCGAAGCTGAGGCC GGATGGGATGGTACTACTAGGAAAGGGTACGAGTTCTTTTGA
AA sequence Show only first row Show all	>Lus10007930 pacid=23162308 polypeptide=Lus10007930 locus=Lus10007930.g ID=Lus10007930.BGIv1.0 annot-version=v1.0 MAADHQPPAPPTDTTTTTTESSSSSSAGPPHEALFLVLPYLYVLELLSISSAGSQLRAAVADDVLPWLDLIVESPLNRRLSDQSLIGLAARGNSRLRSLT LVDCFNVTDDGLLSVISDNPLITKLHVPGCWRLTPEGIIRAVKKLSENRASTGLTSLEINNIHEISKQHYHTLCSYIEQQGTTYHIDVEICPMCDQVRRV YECPRPENEEHEHSGCRRRGCEFCVARCAECRMCARCVDEEILDEEASLCAEVWCSKCWLLLSKCDHCNKPYCARHADRMHWGKVGRGWLCEDCHVEAEA GWDGTTRKGYEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	0	1
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	1.0	0.9301
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	3.2	0.8894
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	3.9	0.8638
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	4.5	0.8795
AT5G35732			unknown protein		Lus10006404 [exp]	4.5	0.8896
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	5.3	0.8868
AT5G18850			unknown protein		Lus10033997 [exp]	5.7	0.8852
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10028810 [exp]	5.7	0.8909
AT5G16550			unknown protein		Lus10002085 [exp]	6.5	0.8883
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	7.7	0.8943

Compare expression of checked genes

Lus10007930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.