Plant FIBer expression Database

Lus10007931 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10370 852 / 0 SDP6 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013467
[exp]
1015 / 0 AT3G10370 862 / 0.0 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G226700
[exp]
894 / 0 AT3G10370 1007 / 0.0 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01266 DAO FAD dependent oxidoreductase
Representative CDS sequence
>Lus10007931 pacid=23162324 polypeptide=Lus10007931 locus=Lus10007931.g ID=Lus10007931.BGIv1.0 annot-version=v1.0
ATGGACATATCATCATCATCAGCTAGCAAAATGCCTAGAGCGCTTTGCAACTGCTGTAGTAATCTCATTGGATGTGTTCGCTACCTGGAGAAAGCAGTAT
TTAATCTCGACTATGGCCAGCTGAAGTTAGTGTTCCATGCACTGGAGGAACGGAAACAGCTTATTGATAATGCACCGCACCTCTGCCATGCTTTGCCATG
CATGACACCCTGTTTTAACTGGTTCGAAGTGGTATACTACTGGACGGGGTTGAAAATGTACGATTTAGTCGCAGGGCCACGCTTATTACACCTCTCTAGA
TATTACAGCACACGGGAGTCTATTGAATTGTTTCCAACGCTCGCCAAGACCGGTAAAGATAGAAGCTTAAGGGGAACTGTGGTATATTATGATGGCCAGA
TGAATGACTCCCGACTTAATGTTGCCTTGGCTTGTACTGCTGCATTAGCTGGAGCTTCCGTGCTCAACCATGCTGAAATCGTTTCTTTCCTCAAAGACAA
GGCTAGTGGGAGGGTTATTGGTGCTCGTGTTAGGGATAATATATCAGGCAAAGAGTTTGATACCTATGCAAAAGTTGTTGTGAATGCTGCTGGGCCGTTT
TGTGATGCCGTGAGGAAAATGGCAAAAGGAGATGCACAACCAATGATCCACCCAAGCAGTGGTGTGCATATTGTTCTACCGGACTATTATTCTCCAGAGG
GGATGGGATTGATCGTTCCGAAAACCAAGGATGGGCGTGTTGTCTTTATGTTACCATGGTTGGGAAGAACAATTGCTGGTACTACAGATTCCGATACTGT
CATCACTCATCTTCCAGAACCACATGAAGATGAAATCCAGTTCATACTTGATGCTATTTCCGACTATTTAGTCGTTAAGGTACGCCGTGAAGATGTTCTT
TCAGCTTGGAGTGGGATTCGCCCTTTGGCTACGGATCCTTCTGCAAAGAACACTGAGAGCATATCTAGAGATCATGTTGTCTGTGAGGAATATCCTGGTG
TCGTCACCATCACTGGTGGCAAATGGACCACTTACAGAGGTATGGCAGAAGATGCTGTTGACGCAGCTGTCAAGTCAGCGAAGCTGAATCCTCCAAATGG
ATCCTTAACTCATCATCTAAGGCTGACAGGTGCCGACGGCTGGCAGCCTTCATATTTTACTGTTCTTGCACAGCAATATATGCGTGCGAAGAAGTCCCAT
GGCGGTAAAGTTGTCCCCGGTGTCATGGATACTGCCGCAGCTAAGCATCTATCTCATGCCTACGGTACATTAGGTGAACGGGTCGCAGCCATTGCACAGA
ATGAAAGTCTAGGGAAGAGACTTGCCCATGGTTACCCGATCCTGGAAGCCGAAGTGGCCTATTGTGCACGCCACGAGTACTGCGAATCGGCAGTGGACTT
CATCGCAAGGAGGTCGCGGCTCGCTTTCCTGGACACTGACGCGGCACATCGAGCATTACCCCGGGTGATCCAGATACTGGCCGGGGAGCATAAATGGGAT
ACAAAGAAGCAGAAGCAAGAATTGGAAGAGGCCAAACGTTTCTTGGAAACTTTCAAGTCGTCGAGAAATGCTCAATTCCATGATGGAAAGCACTAG
AA sequence
>Lus10007931 pacid=23162324 polypeptide=Lus10007931 locus=Lus10007931.g ID=Lus10007931.BGIv1.0 annot-version=v1.0
MDISSSSASKMPRALCNCCSNLIGCVRYLEKAVFNLDYGQLKLVFHALEERKQLIDNAPHLCHALPCMTPCFNWFEVVYYWTGLKMYDLVAGPRLLHLSR
YYSTRESIELFPTLAKTGKDRSLRGTVVYYDGQMNDSRLNVALACTAALAGASVLNHAEIVSFLKDKASGRVIGARVRDNISGKEFDTYAKVVVNAAGPF
CDAVRKMAKGDAQPMIHPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTIAGTTDSDTVITHLPEPHEDEIQFILDAISDYLVVKVRREDVL
SAWSGIRPLATDPSAKNTESISRDHVVCEEYPGVVTITGGKWTTYRGMAEDAVDAAVKSAKLNPPNGSLTHHLRLTGADGWQPSYFTVLAQQYMRAKKSH
GGKVVPGVMDTAAAKHLSHAYGTLGERVAAIAQNESLGKRLAHGYPILEAEVAYCARHEYCESAVDFIARRSRLAFLDTDAAHRALPRVIQILAGEHKWD
TKKQKQELEEAKRFLETFKSSRNAQFHDGKH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10007931
[exp]
0 1
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10013467
[exp]
1.0 0.9233
AT5G21040 FBX2 F-box protein 2 (.1.2) Lus10008402
[exp]
2.4 0.9018
AT5G66820 unknown protein Lus10002968
[exp]
3.2 0.8748
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10033962
[exp]
5.1 0.8460
AT3G58050 unknown protein Lus10016244
[exp]
5.7 0.8884
AT5G11430 SPOC domain / Transcription el... Lus10013146
[exp]
7.0 0.8600
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10013468
[exp]
7.5 0.8836
AT4G35870 early-responsive to dehydratio... Lus10028409
[exp]
8.5 0.8534
AT1G43690 ubiquitin interaction motif-co... Lus10005002
[exp]
11.0 0.8729
AT5G57360 LKP1, FKL2, ADO... ZEITLUPE, LOV KELCH PROTEIN 1,... Lus10015531
[exp]
12.0 0.8550

Lus10007931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.