Plant FIBer expression Database

Lus10007932 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10370 110 / 4e-29 SDP6 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013468
[exp]
206 / 3e-70 AT3G10370 135 / 3e-38 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G226700
[exp]
120 / 9e-33 AT3G10370 1007 / 0.0 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01266 DAO FAD dependent oxidoreductase
Representative CDS sequence
>Lus10007932 pacid=23162313 polypeptide=Lus10007932 locus=Lus10007932.g ID=Lus10007932.BGIv1.0 annot-version=v1.0
ATGTCCAATTCCCGCCACTCCCGCCACTTTTGGCGCCTCGGCCTCCCTGCTGCCACCGTCCTGGCTTACGGCGGTTCCGTACTCGTCTCCAGTGACCGCG
GCGGAGGAGCTGCGGCGGGGCTCGAAGATGTCAGTAAGAAAATCCATGATCCAAAGGCTTCCGTTCCTTCCCGCGCCGTCCAGGAGTCGGCGCTGATCGG
CGCCACAGCAGCCAATCCTCTCGACATTCTCGTCGTTGGCGGGGGTGCCACCGGGTGCGGAGTGGCGCTCGATGCCGTCACGAGAGGGCTCCGCGTCGGC
CTCGTTGAGAGGGATGATTTCGCTTCCGGGACGTCTTCCAGGTCCACCAAACTAATTCATGGAGGCAAGTCTCTAGATTGA
AA sequence
>Lus10007932 pacid=23162313 polypeptide=Lus10007932 locus=Lus10007932.g ID=Lus10007932.BGIv1.0 annot-version=v1.0
MSNSRHSRHFWRLGLPAATVLAYGGSVLVSSDRGGGAAAGLEDVSKKIHDPKASVPSRAVQESALIGATAANPLDILVVGGGATGCGVALDAVTRGLRVG
LVERDDFASGTSSRSTKLIHGGKSLD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10007932
[exp]
0 1
AT2G25320 TRAF-like family protein (.1) Lus10001490
[exp]
2.2 0.9328
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10013468
[exp]
2.4 0.9211
AT1G01220 AtFKGP Arabidopsis thaliana L-fucokin... Lus10005982
[exp]
4.0 0.9198
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Lus10022666
[exp]
5.1 0.9224
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Lus10031201
[exp]
6.0 0.9044
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Lus10024912
[exp]
7.4 0.9167
AT5G37510 CI76, EMB1467 embryo defective 1467, NADH-ub... Lus10000183
[exp]
8.5 0.9075
AT5G51300 splicing factor-related (.1.2.... Lus10038932
[exp]
9.2 0.8851
AT4G03550 ATGSL5, PMR4, G... POWDERY MILDEW RESISTANT 4, gl... Lus10033689
[exp]
11.2 0.9154
AT3G14810 MSL5 mechanosensitive channel of sm... Lus10005555
[exp]
11.4 0.8774

Lus10007932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.