Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01600 714 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 704 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 526 / 2e-178 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 521 / 1e-176 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 451 / 8e-150 ENTH/ANTH/VHS superfamily protein (.1) AT2G01180 423 / 9e-143 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2) AT3G02600 421 / 9e-142 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5) AT1G15080 370 / 2e-122 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) AT3G18220 326 / 6e-105 Phosphatidic acid phosphatase (PAP2) family protein (.1) AT1G03050 229 / 4e-65 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013469 [exp] 1103 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 858 / 0 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 851 / 0 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 534 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035262 [exp] 475 / 3e-162 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10013470 [exp] 456 / 2e-156 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034630 [exp] 446 / 9e-151 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10038122 [exp] 448 / 1e-148 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 444 / 9e-147 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110000 [exp] 832 / 0 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 831 / 0 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 570 / 0 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 556 / 0 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 466 / 1e-155 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 466 / 2e-155 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 449 / 3e-149 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G119400 [exp] 431 / 3e-145 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.017G119500 [exp] 412 / 6e-138 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.004G095400 [exp] 410 / 2e-136 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10007933 pacid=23162306 polypeptide=Lus10007933 locus=Lus10007933.g ID=Lus10007933.BGIv1.0 annot-version=v1.0 ATGGGAACGCTTCAAACATGGAGGAAAGCCTATGGCGCCATTAAAGACACCACCAAAGTCGGCCTCGCTCATGTCAACAGCGATTACGCGGAACTGGATG TGGCAATTGTCAAGGCCACGAATCATGTCGAGTGCCCACCCAAGGAGAGACACCTCAGAAAGATCTTGTTTGCTACTCAAGCGATTCGTCCCAGAGCTGA TGTTGCTTACTGTATCCACGCTCTTTCCCGGAGGTTGACCAAGACTCATAACTGGACGGTGGCATTGAAGACACTAATAGTGATCCATAGATTGCTAAGG GAAGGCGACCCTACTCTTAGAGAAGAACTGCTGAATTACTCTCAAAGAGGACGTATTCTTCAGCTTTCCAATTTCAAGGATGATTCTAGTCCCATCGCAT GGGATTGCTCTGCTTGGGTTCGTACTTATGCACTGTTTCTGGAGGAGCGTCTTGAATGCTTTAAAATCTTGAAGTATGACATTGAAGCCGAGCGTCTCCT GAAACCTGTTCAGGGGGAGGATAAGGGCCATAGCAGAACCAGGGAGTTGGACAGTGAGGAGCTGCTGGAGCAACTTCCCGCTTTACAACAGTTGCTGTAT CGTCTTATTGGTTGTCGGCCAGAAGGTGCAGCTGTCCGCAATTACGTTATTCAGTATGCTCTAGCTCTGGTGTTGAAAGAGAGCTTTAAAATATACTGTG CTATTAATGATGGAATTATCAATCTTGTGGATAAGTTTTTCGAAATGCCGAGGCATGAAGCTGTCAAGTCCCTTGATGTCTATAGAAGAGCTGGCCAACA GGCTGCCAGCCTTTCTGATTTCTACGAAGTGTGCAAAGGATTGGAACTTGCTAGGAACTTTCAGTTCCCTGTCTTAAGAGAGCCTCCACAATCGTTTCTT ACAACCATGGACGAGTACATACGAGAGGCACCTCGAGCTGTTTCTGTTACAACTGAACCATTGCTCATGTTGACGTACCGGCCAGAAGAAGGTCCTTCCG AGGATGCCAAATCAAGCGACGAACCTGAGCAACTTCCTGCCGATACTGTTGCTGTTTCCCATGTTGAGGTTTCTCAGACTCCTCCTTCGCCTCCTCCCGT AGCTCATCAGAACGGCATGGATACCGGAGATCTCTTGGGGTTGAGTGATCCGTCTCCGGATGCATCTGCAATAGAGGACAGAAATGCATTGGCTTTAGCT ATTGTACCCACCGAAACAGATACTGCTCCAACGTTCAATTCCGGTGCTGGTCAAGCCAAAGAATTTGATCCAACTGGATGGGAACTTGCTCTGGTCACCG CTCCGAGCAGCAACATCTCGTCGTCGAACGAGAGGCAGCTGGCCGGTGGACTGGACACGCTAACTCTAAACAGCCTATACGATGATGGTGCATACAGAGC AGCCCAAAAGCCGGTTTACGGAGCTCCAGCACCGAACCCATTCGAGGTGCACGACCCGTTCGCTCTCTCAACCAGCGTCGCTCCACCACCACCGGTACAA ATGGCAGCAATGGGCCAACATCAACATCATCAACAGCAGCGGCGGAAGCAGCAGGAAGAGCCACAGGGGAGGAGGATGAGAGAGGTGGATCTTGGTGCTC ACACGATTCAAAGTCATGGATCTAAACTTGCTAGGTACCACATGTACGATTGGCTCATCTTGTTGCTGCTTGGTGCGATAGAGATCACTCTTTACATCAT TCATCCTTTCTACCGGTTTGTGGGGAAAGATATGATGGAGGATCTCAGATACCCCTTGAAGGATAACACTGTTCCTGTTTGGTCTGTCCCCCTATATGCA GTCATACTTCCGATTCTGGTCTTTGTAGTCTTCTATTTCCGGAGGAGATGCGTCTATGATCTCCACCATGCAATCTTAGGCCTCTTATTCTCCGTGCTGG TTACTGCTGTACTCACTGATGCCATCAAAGATGCAGTGGGGAGGCCAAGGCCTGACTTCTTTTGGCGCTGCTTCCCTGACGGCAAGGATCTCTATGATCA ATTGGGAGACGTGATCTGCCATGGAAATTCCGATGACATAAAGGAAGGACACAAGAGCTTCCCCAGCGGGCATGCTTCCTGGTCGTTTGCTGGACTAGGC TTCCTGTCGCTGTATCTGAGCGGCAAGATCAAGGTGTTCGACAGGCAAGGACATGTTGCGAAGCTGTGCATCGTGATCTTACCTCTCCTCGTTGCATGCC TCGTAGCGATCTCGCGAGTCAACGACTACTGGCACCACTGGCAGGACGTGTTTGCTGGATCGCTCTTGGGGCTCGTGGTTTCAGGATTCTGTTACCGTCA GTTCTTCCCATCCCCCTACCACGATCAAGGTTGGGGTCCTTATGCATATTTCCTTGCACTGGAGGAAGAGTCACGCTCTGGTGCCGATCCGAATTCGCTT ACCAACAATGAAGCCATGGAAGCACGGCAGCATCAGCATCATCCAACGAATGGTGATCTTCAGTTTACATCTATAGATCTTGAATCTGGAGGAAGATGA
AA sequence Show only first row Show all	>Lus10007933 pacid=23162306 polypeptide=Lus10007933 locus=Lus10007933.g ID=Lus10007933.BGIv1.0 annot-version=v1.0 MGTLQTWRKAYGAIKDTTKVGLAHVNSDYAELDVAIVKATNHVECPPKERHLRKILFATQAIRPRADVAYCIHALSRRLTKTHNWTVALKTLIVIHRLLR EGDPTLREELLNYSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFKILKYDIEAERLLKPVQGEDKGHSRTRELDSEELLEQLPALQQLLY RLIGCRPEGAAVRNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAVKSLDVYRRAGQQAASLSDFYEVCKGLELARNFQFPVLREPPQSFL TTMDEYIREAPRAVSVTTEPLLMLTYRPEEGPSEDAKSSDEPEQLPADTVAVSHVEVSQTPPSPPPVAHQNGMDTGDLLGLSDPSPDASAIEDRNALALA IVPTETDTAPTFNSGAGQAKEFDPTGWELALVTAPSSNISSSNERQLAGGLDTLTLNSLYDDGAYRAAQKPVYGAPAPNPFEVHDPFALSTSVAPPPPVQ MAAMGQHQHHQQQRRKQQEEPQGRRMREVDLGAHTIQSHGSKLARYHMYDWLILLLLGAIEITLYIIHPFYRFVGKDMMEDLRYPLKDNTVPVWSVPLYA VILPILVFVVFYFRRRCVYDLHHAILGLLFSVLVTAVLTDAIKDAVGRPRPDFFWRCFPDGKDLYDQLGDVICHGNSDDIKEGHKSFPSGHASWSFAGLG FLSLYLSGKIKVFDRQGHVAKLCIVILPLLVACLVAISRVNDYWHHWQDVFAGSLLGLVVSGFCYRQFFPSPYHDQGWGPYAYFLALEEESRSGADPNSL TNNEAMEARQHQHHPTNGDLQFTSIDLESGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10007933 [exp]	0	1
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10023265 [exp]	6.2	0.8666
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	9.5	0.7881
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	9.8	0.7768
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	18.0	0.7551
AT1G78310			VQ motif-containing protein (....		Lus10010347 [exp]	27.2	0.7852
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	30.4	0.7646
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	32.3	0.7934
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	33.2	0.7731
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	34.1	0.7897
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10042820 [exp]	51.4	0.7830

Compare expression of checked genes

Lus10007933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.