Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 273 / 4e-83 Protein kinase superfamily protein (.1) AT5G38280 254 / 9e-76 PR5K PR5-like receptor kinase (.1) AT1G70250 247 / 3e-72 receptor serine/threonine kinase, putative (.1) AT1G66910 244 / 4e-72 Protein kinase superfamily protein (.1) AT1G67000 248 / 6e-72 Protein kinase superfamily protein (.1) AT4G18250 247 / 9e-72 receptor serine/threonine kinase, putative (.1) AT1G66930 243 / 2e-71 Protein kinase superfamily protein (.1) AT1G66920 241 / 2e-71 Protein kinase superfamily protein (.1.2) AT5G39030 229 / 1e-65 Protein kinase superfamily protein (.1) AT5G39020 227 / 8e-65 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013472 [exp] 452 / 9e-158 AT5G38280 177 / 2e-51 PR5-like receptor kinase (.1) Lus10025492 [exp] 316 / 3e-99 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 300 / 3e-93 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10014923 [exp] 270 / 2e-82 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025545 [exp] 256 / 5e-80 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 264 / 5e-79 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025553 [exp] 261 / 1e-78 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10022359 [exp] 258 / 5e-78 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 249 / 4e-75 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125500 [exp] 511 / 2e-175 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) Potri.010G118300 [exp] 489 / 8e-167 AT1G66920 316 / 1e-99 Protein kinase superfamily protein (.1.2) Potri.015G018600 [exp] 332 / 1e-105 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G009100 [exp] 307 / 1e-95 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 303 / 9e-94 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G125000 [exp] 300 / 3e-93 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 296 / 1e-91 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 293 / 2e-90 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.017G007900 [exp] 293 / 2e-90 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G009600 [exp] 289 / 2e-88 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10007934 pacid=23162335 polypeptide=Lus10007934 locus=Lus10007934.g ID=Lus10007934.BGIv1.0 annot-version=v1.0 ATGAAAACACTCTCAACTCTCCTCCTTTTCCTCTTCATTTCCCTCCTTTCCCCCAAACAATCCCACTCCAGATCCCTCCCTCAGCTCTGTAATTCCACCT GCGGCCACCTCACCAACATCACTTACCCATTCCGTCTCACCACCGACCCACTAACCTGCGGGGACTCCGACTACCAAATCACCTGCTTCAACAACACCAC CCCACTCTTCCGCTTCCACTCCTCCTCCTACATCGTCCGCCGCATCTTCTACGATCGCCACGTCATCCGCCTCGTCGACCCAAAGTTCTTCCCCGATCAC AGCTGCTCCCTCCCTTCCCAGTCCCTCTCCGCCGGCGACCTCACCCAGGACCCGCGATTCGCCGCCTACGCTTTCAACACCGACACCAGCTTCCTCCGCT GCTCCGGAAACCTCAGCAGCCAGCAATCTTACCGGAAGCTTCCTTGCCTGAGCGATATTTACGTCAGCTACGGAACTTACATAATCTCTGGTCTCAATGG GACTTGCAATTTCATTTCCAGGGTTCCGACGATTTATCAGCCAGTATCGAATCCTTCCTATGAAAGCATCGTCCAGCTTTTGCAGGAAGGGTTTGATCTT GGTTGGTCCCTTGAGTGCCGCGATTGCCTTGCTCGTGGCCGTGGTTGCGTTTTGACTGAGTTCGCTTCTACTCCATCGATCTTTGAATGTGGCAGCTCAG AGAATTACCTTCCAGCTGTGGTTTCATCTGCCATCTCGGCTCTTTCCGGTCTTTTCTTCGTGATCAATCTGATTGCAAGGTTCATCCTAGCTCCAGTAGT GATAGCAGCCTTCCTGATCCACAAGTGCAGAACATCTCCGAAGAGTTTTCCACCAGTGGAGATCATGAGGAAGAAGTTCGTCTCAAATTCTCTTCCCAGG AGGTACTCTTACTCCGAAATCGAGGTAATGACTGAACAATTCAAGCACGGATTAGGCCGTGGTAGGTTCGGAACCGTGTTCAAGGGTACTCTCCCCGAGA ATGGCGGATTTGTTGCTGTCAAAATGATTGATGATCGTTTGAATCTCATTGGTGAGAGCTTTATGAATGAGATATCTACAATTTCTGGAACTCGTCACGA AAATGTGGTTAGGCTTATCGGATTTTGTTGCGAAGGATCTCGCCGTGTTCTTGTGTACGAGTACATCCCTAACGGATCGCTCGATAAACGTCTTCTTCTT CCGGTTAGCTGGGAGCAGCTCGATCGGATCGCGATAGGGACGGCTCGAGCCATCCGCCATCTGCACGATGTCTCGTCAGTTCTTCATCTAGACATAAATC CTCGAAATGTCCTGCTGGACAGTGATTTCACTCCGAAAGTTGCAGATTTCGGCCTAGCCAAGTTGTGTAGTCAGAATCGCCTCTCCAGACTGTACATTGC ACCGGAAGTGTTCTCGGATGGCATCGAGGCCGTTTCGAGCAAATCCGACGTCTACAGCTTCGGAATGCTGTTGCTAGGAATGGTCGAATCAAAGAGCAAG TGCTCTTCGGAGGTGTACTTTCCAACGTGGGTTCACGACCATCTGAGCAACGGAGGAGACTTGGAGCTGAAGAATGTGATGGAGATCGAATCCGCGGTGG CCAGGAAGCTGTGCGTGGTGGGGTTATGGTGCATCCAGAAGAGCCGATCGCATCGTCCACCGATGTCCAAAGTGGTGGAAATGTTGACCTGTGGTCAACT GGAGTTGCCTCCAAACTCACTGTGCTTTCCAGAGGATGACTCTGCTAAGGATGTTCTGTCGTCGTCGGATTCTTTCAGGCGGCTGTTGCCTCAGTCTGTG GAGCCGAGCTCGTAG
AA sequence Show only first row Show all	>Lus10007934 pacid=23162335 polypeptide=Lus10007934 locus=Lus10007934.g ID=Lus10007934.BGIv1.0 annot-version=v1.0 MKTLSTLLLFLFISLLSPKQSHSRSLPQLCNSTCGHLTNITYPFRLTTDPLTCGDSDYQITCFNNTTPLFRFHSSSYIVRRIFYDRHVIRLVDPKFFPDH SCSLPSQSLSAGDLTQDPRFAAYAFNTDTSFLRCSGNLSSQQSYRKLPCLSDIYVSYGTYIISGLNGTCNFISRVPTIYQPVSNPSYESIVQLLQEGFDL GWSLECRDCLARGRGCVLTEFASTPSIFECGSSENYLPAVVSSAISALSGLFFVINLIARFILAPVVIAAFLIHKCRTSPKSFPPVEIMRKKFVSNSLPR RYSYSEIEVMTEQFKHGLGRGRFGTVFKGTLPENGGFVAVKMIDDRLNLIGESFMNEISTISGTRHENVVRLIGFCCEGSRRVLVYEYIPNGSLDKRLLL PVSWEQLDRIAIGTARAIRHLHDVSSVLHLDINPRNVLLDSDFTPKVADFGLAKLCSQNRLSRLYIAPEVFSDGIEAVSSKSDVYSFGMLLLGMVESKSK CSSEVYFPTWVHDHLSNGGDLELKNVMEIESAVARKLCVVGLWCIQKSRSHRPPMSKVVEMLTCGQLELPPNSLCFPEDDSAKDVLSSSDSFRRLLPQSV EPSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38260			Protein kinase superfamily pro...		Lus10007934 [exp]	0	1
AT1G44960			SNARE associated Golgi protein...		Lus10006050 [exp]	2.4	0.8611
					Lus10042011 [exp]	17.9	0.8418
AT1G71740			unknown protein		Lus10041497 [exp]	23.2	0.8416
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	24.2	0.8441
AT1G22030			unknown protein		Lus10015473 [exp]	27.3	0.8374
AT2G34700			Pollen Ole e 1 allergen and ex...		Lus10014013 [exp]	31.0	0.8352
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	32.6	0.8355
AT3G25590			unknown protein		Lus10034409 [exp]	35.8	0.8405
AT4G34630			unknown protein		Lus10017493 [exp]	42.2	0.8091
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10026084 [exp]	43.4	0.8328

Compare expression of checked genes

Lus10007934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.