Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26410 207 / 4e-67 Uncharacterised conserved protein UCP022280 (.1) AT2G45060 100 / 2e-25 Uncharacterised conserved protein UCP022280 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013474 [exp] 408 / 2e-146 AT4G26410 250 / 1e-83 Uncharacterised conserved protein UCP022280 (.1) Lus10034621 [exp] 291 / 5e-100 AT4G26410 241 / 1e-79 Uncharacterised conserved protein UCP022280 (.1) Lus10035249 [exp] 287 / 2e-98 AT4G26410 244 / 7e-81 Uncharacterised conserved protein UCP022280 (.1) Lus10042878 [exp] 117 / 9e-32 AT2G45060 286 / 3e-97 Uncharacterised conserved protein UCP022280 (.1) Lus10028177 [exp] 109 / 7e-29 AT2G45060 268 / 4e-90 Uncharacterised conserved protein UCP022280 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001300 [exp] 225 / 2e-74 AT4G26410 266 / 4e-90 Uncharacterised conserved protein UCP022280 (.1) Potri.002G142900 [exp] 119 / 7e-33 AT2G45060 287 / 2e-97 Uncharacterised conserved protein UCP022280 (.1) Potri.014G058700 [exp] 101 / 8e-26 AT2G45060 293 / 4e-100 Uncharacterised conserved protein UCP022280 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007935 pacid=23162280 polypeptide=Lus10007935 locus=Lus10007935.g ID=Lus10007935.BGIv1.0 annot-version=v1.0 ATGGCGGATGGCAGTGATGAAATCAAACTAGGTAAAGAACATGTGAAGGAGACAACAAGTACTGGATCAGGTGGAAACTGGGTGGATGATTTGCAGAGGA CTGTGGTAGGATCCAAGGAATCGAATCACTATCTTCCTCGTGCCGGCTCTAGTTTGAAGAATTATGAAGATGCATTCCTTACCAAACTTGGAGATGGACT AAGGACTGCCAAAGAACATCCTGCTGCTTGTCTTGGAGTTGCTCTTGCCTCTTCCCTTCTTCTCATGCGAGGGCCGCAGAGGTTTTTGCTGCGCCAGACA TTCGGAAGATTCGAGAGTGAGGAGGCAAGATTCCGCAAAGCTGAGAAGAAGGTGAAAGATTTCGTTGTTTCGGTCGATCTGATGCAGAAGGAGAGCAAGA AGTTGCTGGAGAGGGCAGCTCTAGCCGAGAACGATGTGACGCATGGCTACACCGAGCTCAAGGACGCAGGAAATGAAATCCAGCAATCAGCCAAATCCAC CTACAAGGTTGAGCTTCAGGCTACAGATTTGGTCGACGGTCTGCGAGCAATTCCTGGGAGGGAAGCACTGAAGCTTCGACTTGAGGTTGCTTCCATGGCG TCGAATTTGAATAAGCAGAGGACAGAGCTTGATAGGAGAATCCTGAAGATTTCTGAACTAGGCGCCGGTTAG
AA sequence Show only first row Show all	>Lus10007935 pacid=23162280 polypeptide=Lus10007935 locus=Lus10007935.g ID=Lus10007935.BGIv1.0 annot-version=v1.0 MADGSDEIKLGKEHVKETTSTGSGGNWVDDLQRTVVGSKESNHYLPRAGSSLKNYEDAFLTKLGDGLRTAKEHPAACLGVALASSLLLMRGPQRFLLRQT FGRFESEEARFRKAEKKVKDFVVSVDLMQKESKKLLERAALAENDVTHGYTELKDAGNEIQQSAKSTYKVELQATDLVDGLRAIPGREALKLRLEVASMA SNLNKQRTELDRRILKISELGAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26410			Uncharacterised conserved prot...		Lus10007935 [exp]	0	1
AT3G48860			unknown protein		Lus10043194 [exp]	12.1	0.7608
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	13.2	0.7525
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10028877 [exp]	13.6	0.7425
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	14.4	0.7592
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	25.4	0.6549
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	32.7	0.7281
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	37.6	0.7336
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	43.8	0.7048
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	45.3	0.7379
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	53.8	0.6916

Compare expression of checked genes

Lus10007935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.