Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01150 104 / 2e-29 RHA2B RING-H2 finger protein 2B (.1) AT1G15100 99 / 6e-27 RHA2A RING-H2 finger A2A (.1) AT4G11360 58 / 3e-11 RHA1B RING-H2 finger A1B (.1) AT5G20885 56 / 2e-10 RING/U-box superfamily protein (.1) AT5G45290 57 / 3e-10 RING/U-box superfamily protein (.1.2) AT5G41430 56 / 3e-10 RING/U-box superfamily protein (.1) AT1G35625 56 / 5e-10 RING/U-box superfamily protein (.1) AT3G61180 56 / 7e-10 RING/U-box superfamily protein (.1) AT2G04240 54 / 8e-10 XERICO RING/U-box superfamily protein (.1.2) AT3G14320 55 / 9e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013475 [exp] 277 / 2e-97 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10007937 [exp] 165 / 3e-53 AT1G15100 100 / 2e-27 RING-H2 finger A2A (.1) Lus10019150 [exp] 65 / 6e-14 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10034407 [exp] 64 / 2e-13 AT2G04240 61 / 2e-12 RING/U-box superfamily protein (.1.2) Lus10019685 [exp] 61 / 2e-12 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10003617 [exp] 61 / 3e-12 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10027736 [exp] 57 / 6e-11 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10002194 [exp] 58 / 1e-10 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10004977 [exp] 57 / 4e-10 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125700 [exp] 92 / 5e-24 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1) Potri.010G118000 [exp] 88 / 2e-22 AT1G15100 142 / 7e-44 RING-H2 finger A2A (.1) Potri.005G081200 [exp] 73 / 9e-17 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.007G086300 [exp] 72 / 2e-16 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.008G185800 [exp] 71 / 3e-16 AT1G67856 127 / 2e-38 RING/U-box superfamily protein (.1) Potri.010G047100 [exp] 65 / 3e-14 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.005G081300 [exp] 64 / 2e-13 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086100 [exp] 62 / 8e-13 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 62 / 1e-12 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.018G098100 [exp] 59 / 2e-11 AT2G18670 91 / 2e-23 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10007936 pacid=23162322 polypeptide=Lus10007936 locus=Lus10007936.g ID=Lus10007936.BGIv1.0 annot-version=v1.0 ATGGGATCGCCGACCGACCTCACAGATCTCTCCGACGGATCAATCTACTGGCTCCTCTTCATCCTCCTCTCCAACTCCATCAAATCCTTTCGCCGCTTCT TCTCCCGCCCAATCAGCGATGTTGACAACGAGACTACTTCCTCTTCTCCGCGATCCACCGCCGTGGAAGATCAGCTAAGTCTCAACCGCCGATCCTCCTG CCTCTACTCCGAAGGATCGGATTCCGACGACTGCGTGGTGTGCCTGTGCGGCCTCAGCGAAGGCGAGCTAGTCAGGGAGCTCGATTGCCGCCACGTGTTC CACAAAGGATGCCTCGACGGCTGGCTCCGCCGCTGCAATTTCACTTGCCCGATCTGCCGATCCCCGCTTCTCCTGCTGGCTGCGCGTAGCTGTCCCGACG ACGGCGGACTGGTGGCGCGTGGTGGGGTGAGTAATTTCTAG
AA sequence Show only first row Show all	>Lus10007936 pacid=23162322 polypeptide=Lus10007936 locus=Lus10007936.g ID=Lus10007936.BGIv1.0 annot-version=v1.0 MGSPTDLTDLSDGSIYWLLFILLSNSIKSFRRFFSRPISDVDNETTSSSPRSTAVEDQLSLNRRSSCLYSEGSDSDDCVVCLCGLSEGELVRELDCRHVF HKGCLDGWLRRCNFTCPICRSPLLLLAARSCPDDGGLVARGGVSNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	0	1
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	1.4	0.8451
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	5.0	0.7936
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	5.5	0.8445
AT4G34630			unknown protein		Lus10028793 [exp]	6.3	0.8049
AT1G16840			unknown protein		Lus10037317 [exp]	8.5	0.7582
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	9.9	0.8055
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004972 [exp]	11.7	0.7493
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	12.4	0.7787
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	12.4	0.7584
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	12.7	0.7868

Compare expression of checked genes

Lus10007936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.