Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01150 81 / 6e-20 RHA2B RING-H2 finger protein 2B (.1) AT1G15100 78 / 6e-19 RHA2A RING-H2 finger A2A (.1) AT3G61180 55 / 2e-09 RING/U-box superfamily protein (.1) AT3G55530 54 / 3e-09 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT2G42360 54 / 4e-09 RING/U-box superfamily protein (.1) AT5G41450 52 / 4e-09 RING/U-box superfamily protein (.1) AT5G40250 54 / 5e-09 RING/U-box superfamily protein (.1) AT2G04240 52 / 7e-09 XERICO RING/U-box superfamily protein (.1.2) AT1G04790 53 / 1e-08 RING/U-box superfamily protein (.1) AT1G22500 53 / 1e-08 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007936 [exp] 131 / 7e-40 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 130 / 2e-39 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10034407 [exp] 57 / 9e-11 AT2G04240 61 / 2e-12 RING/U-box superfamily protein (.1.2) Lus10019150 [exp] 55 / 4e-10 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10019685 [exp] 55 / 5e-10 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10037170 [exp] 56 / 6e-10 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10036757 [exp] 56 / 8e-10 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10003617 [exp] 54 / 1e-09 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10004977 [exp] 55 / 2e-09 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125700 [exp] 73 / 8e-17 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1) Potri.007G086300 [exp] 70 / 2e-15 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.010G118000 [exp] 67 / 2e-14 AT1G15100 142 / 7e-44 RING-H2 finger A2A (.1) Potri.005G081200 [exp] 65 / 9e-14 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.010G047100 [exp] 64 / 2e-13 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.008G185800 [exp] 63 / 3e-13 AT1G67856 127 / 2e-38 RING/U-box superfamily protein (.1) Potri.007G086200 [exp] 62 / 1e-12 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.005G081300 [exp] 61 / 2e-12 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.010G133200 [exp] 61 / 2e-12 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133300 [exp] 61 / 2e-12 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10007937 pacid=23162321 polypeptide=Lus10007937 locus=Lus10007937.g ID=Lus10007937.BGIv1.0 annot-version=v1.0 ATGGGATCTCCGACAGACCTCACAGACCTCTCCGACGGCTCAATCCACTGGCTAATCTTCCTCCTCCTCTCCAACTCGATCAATTCCTTCCTCCGCTTCT TCTCCCAACTCCTCCTAATCCCCTCTCCGCGGTCGACTACTTCCTCCTCCACCTCCGCCAGCTGCTGCGGCGGCTCCATCGCCGTCGAAGACCAGCTCAA TCTCAACCGCCGCTCATCCTGCCTCTACTCCTCCGGAGGAGAACCGGGAGGAGGATCTGAATCCAACGAGTGCGTGGTGTGCCTCTGCGGACTCAGCGAA GGGGAGCTAGTCAGGGAGCTGGACTGCCGCCACGTCTTCCACAAAGGCTGCCTCGACGGGTGGCTCCGCCGCTCCAATTTCACCTGCCCGATCTGCCGCT CCTCGCTGGAGGCGCGTGGTGGTGCGTTGCTTGTCGCGGAGGTGGAGGTGCGGTGA
AA sequence Show only first row Show all	>Lus10007937 pacid=23162321 polypeptide=Lus10007937 locus=Lus10007937.g ID=Lus10007937.BGIv1.0 annot-version=v1.0 MGSPTDLTDLSDGSIHWLIFLLLSNSINSFLRFFSQLLLIPSPRSTTSSSTSASCCGGSIAVEDQLNLNRRSSCLYSSGGEPGGGSESNECVVCLCGLSE GELVRELDCRHVFHKGCLDGWLRRSNFTCPICRSSLEARGGALLVAEVEVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Lus10007937 [exp]	0	1
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	2.6	0.8125
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	10.2	0.7902
AT1G16840			unknown protein		Lus10033369 [exp]	14.4	0.7404
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	17.3	0.7888
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	30.0	0.7857
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	30.5	0.7272
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	30.6	0.7390
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	45.0	0.7580
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009180 [exp]	55.3	0.7372
AT2G44310			Calcium-binding EF-hand family...		Lus10008649 [exp]	55.5	0.7508

Compare expression of checked genes

Lus10007937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.