Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01130 1420 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 1403 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G04895 1234 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 794 / 0 RNA helicase family protein (.1) AT1G58060 531 / 3e-166 RNA helicase family protein (.1) AT1G58050 484 / 5e-149 RNA helicase family protein (.1) AT2G47250 325 / 1e-96 RNA helicase family protein (.1) AT3G62310 320 / 5e-95 RNA helicase family protein (.1) AT5G13010 296 / 7e-83 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT4G18465 285 / 8e-83 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013479 [exp] 2136 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 1293 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10034126 [exp] 1228 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 1226 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 1202 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 749 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 546 / 3e-178 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10005261 [exp] 296 / 4e-86 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10029806 [exp] 284 / 4e-79 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117800 [exp] 1633 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 1385 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G246000 [exp] 1260 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 1226 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 798 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 544 / 4e-171 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 320 / 6e-95 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 317 / 7e-94 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 279 / 3e-77 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.005G206500 [exp] 270 / 2e-74 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10007938 pacid=23162297 polypeptide=Lus10007938 locus=Lus10007938.g ID=Lus10007938.BGIv1.0 annot-version=v1.0 ATGAAAGACAGGCCGCCGTCCCCTTACGGCGCCGTTTACGTTCCTCCGCACCAGCGTCTCCGCTCCGTGATCGTCTCCCCCAATTTCAACTCCTCCTCTG CATCTTCTCATCTTCTGGAGTCCAGAACTACTGACAGTCGATGCGCTGCTCTCAGCCGCAGTAAGGCTAGCAGTCCTTCCCCTACAGAACATCAGCAGAG AAATGGCGGTGCTGCTGAGGTCTGTAACAAGAATCCGATTCGGAAATTTGCCTCTGCCTGCGTCAATGCTGTCTCCGTGGACGGGTCCGATCACGATATG GAGTCCTTGCCAGCCCACCCATCAGGAACTTATATGTCTGATAGCACTGAAGAGTGGAGATGGAAGTTCACGATGCTTTTGCGTGACAAAGAGAAGAAAG AAGTGGTATCAAGGGAGAAAAAGGACAGACGTGATTTCGAGCAACTAGCCGCTTTAGCAAGCAAAATGGGTCTATATAGCCGTGTGTATGTGAAAGTTGT TGTCTTTAGCAAAGTCCCACTGCCGAACTACAGATTTGATTTGGATGATAAGCGTCCTCAACGGGAGGTTAGCTTGCCTCTTGGCGTATTGAAAAGAGTT GATACGTATCTTGGAGACTATGTCTTCCAAAAGTCCAAGACTAAGGAATGCTGTCTGGATATGTCTAGATCAAACAGTAGTGGTAGCCTTGGGGCTGATG AAGGGCTGTTTGAGCTACCGGAATCCCTGGCTTCTAGCAATATTGTGTTGGAGAAAGCCTTGCGGCGGAGAAGTCAACATTTGTATGATAAGCAATTGTC TTGGCAGGAGTCTCCAGAAGGAAGGAAAATGATGGAATTTCGAAAAACCCTTCCTGCATACAAGGAGAAGAATGCAATATTGACAGCTGTTGCACAGAAT CAGGTGGTCATCATATCAGGTGAGACTGGTTGCGGTAAGACAACACAAATTCCCCAGTTTATCCTGGAATCTGTAATAGATGCTGCTCGTGGAGCTGCTT GTAGTATTATATGCACACAACCAAGACGAATATCTGCGATCTCTGTTTCTGAAAGAGTTGCTACGGAGAGAGGAGAGAAACTTGGAGAATCTGTCGGTTA TAAGGTTCGGCTTGAAGGTATTAAAGGCAGGGAAACACACCTCCTCTTCTGCACAACAGGAATCTTATTGAGAAGATTACTTGTGGATCGAAGCTTGAAG GGAGTAAGCCATGTGATAGTGGACGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTTAAAGATCTGCTATCCCGTCGACCAGACC TGAGGCTCGTTCTGATGAGTGCAACCCTTGATGCGGAGCTTTTCTCATCCTACTTTAACAGAGCTCCTATTCTCCGTATCCCAGGTTTTACATTCCCAGT GAAAACTCATTTCCTGGAAAATATTCTGGAAATGACGGGATACCGTTTGACTCCATACAATCAAATTGACGATTATGGTCAAGAGAGGGCATGGAAACTA AATAAGCAAGGTCCAAAAAGGAGAAAGAGCCAAATTGCGTCGGCAGTTGAGGATGCACTCAGAACAGCTGATTTCAGGAAATACAGAAAAGAGACTCGAG ATTCTCTGTCTTTATGGAATCCTGATTGCATTGGTTTTAATCTGATCGAGTATCTACTGAGCTACATCTGTGAAAATGAGAGACCTGGTGCTATTCTGGT TTTTTTGACTGGGCTTGACGACATAAGTTCTTTAAAGGACAAACTCCAAGCTCATACCATCTTGGGAGATCCTAGACGAGTCTTGTTGCTCACTTGCCAT GGCTCAATGGCCAGCTCTGAGCAGAGGTTAATATTTGATGTGCCACCTTATGGCGTGAGAAAAATAGTGCTGGCCACGAATATTGCCGAGACAAGCCTCA CAATAAATGATGTTGTTTATGTTATTGAGTGTGGGAAAGCAAAGGAGACTTCATACGATGCTCTCAACAACACTCCTTGTCTGCTCCCTTCTTGGATTTC TAAAGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGCCGGGTTCAACCGGGAGAATGTTACCATCTATATCCAAGATGTGTATATGATGCTTTTGCGGAG TATCAGTTGCCAGAAATCTTGAGAACGCCTTTACAGTCACTCTGTTTGCAAATCAAGAGTTTGAAACTTGGAAGTATCTCTGAGTTTCTGTCTAAGGCTT TGCAATCACCCGAGCTACTGGCGGTTGAGAAAGCTATTGAGTACTTGAAAGTTATAGGCGCCTTGGATAAAAAAGAAGATTTGACTGTGCTGGGGAAGTA CTTGACTAGGCTTCCCGTGGAGCCTAAACTCGGAAAGATGCTCGTTTTAGGTGCTATCTTCAATTGCCTGGATCCGATTTCAACCATTGTTGCAGGACTA AGTTTTCGAGATCCTTTCTTAACACCCCTTGACAAGAAAGATCTTGCAGATGCCGCGAAAGCTCAGTTTTCACGTGACTATAGCGACCACATGGCCCTTG TTCGGGCCTTTAATGGCTGGAAAGATGCTGAAAGGAATTTCGCTGGTCATGACTATTGCTGGAAGAATTTCCTCTCTGTTCAATCCATGAAGGCTATTGA ATCTCTCAGGAAGGAGTTCTTCTCCTTGATAAGGGATATTGGCCTGATTGATAGTAATGCACACAGTAACGGTTTGAGCCACGAGGAGCACTTTGTTCGA GCAGTTATTTGTTACGGCCTTTACCCCGGAGTGTGCTCTGTCGTGAACAATGAAAAGTCGTTTTCGCTCAAAACTATGGAGGATGGTCAGGTGCTGCTAT ATTCTAACTCTGTCAATGCTCAGAATTCCAGCATCCCCTATCCATGGTTAGTTTTTAACGAGAAGGTCAAAGTCAATGCTGTCTTCCTCCGCGACTCCAC AGCTGTTTCAGACTCAATGTTGCTTCTTTTCGGTGGAACCGTCACGAAAGGGGATGCTGATGGTCACTTGAAGATGCTAGGAGGATATCTGGAATTCTTC ATGAAACCGGCAGTGGCGGAAATGTATACCAACTTGAAAAGAGAACTCGATGAGCTTATTCAGATGAAACTACTCAATCCGAAAATGAGCTTAAAGCCAC ACGACGAGCTTTTCTCAGCAGTACGGTTACTCCTCTTTGAGGATCGCTCCGATGGAAGATTCTTATTTGGCCATCAGCTGCTCAACCTTACGAAACCCCC CGTGGTGGCTTCAACGACAAGAAAGCCGATTCTGGCATCAGGAGGTGACAGTGGACCCGGAGGCGATAACCCAAAGAGCCAACTCCAAACGCTGCTGACG AGAGCCGGGTACACTGCGCCGGTATACAAAACGAAGCAACTGAAGAACAACCAGTTCCGGTCCACCGTGGAGTTCAACGGCATGGAAGTGATGGGGAACC CTTACGGAAACAAGAAGAGCGCGGAGAAGGATGCCGCGGCAGAGGCCCTGCTGTGGTTGATGGGCGGATCTCAGACCGGTCGTGATTACATCGACCAAAT GTCGATTCTGCAGAAGAGAAGCAAGAAGAATCATTTCTGA
AA sequence Show only first row Show all	>Lus10007938 pacid=23162297 polypeptide=Lus10007938 locus=Lus10007938.g ID=Lus10007938.BGIv1.0 annot-version=v1.0 MKDRPPSPYGAVYVPPHQRLRSVIVSPNFNSSSASSHLLESRTTDSRCAALSRSKASSPSPTEHQQRNGGAAEVCNKNPIRKFASACVNAVSVDGSDHDM ESLPAHPSGTYMSDSTEEWRWKFTMLLRDKEKKEVVSREKKDRRDFEQLAALASKMGLYSRVYVKVVVFSKVPLPNYRFDLDDKRPQREVSLPLGVLKRV DTYLGDYVFQKSKTKECCLDMSRSNSSGSLGADEGLFELPESLASSNIVLEKALRRRSQHLYDKQLSWQESPEGRKMMEFRKTLPAYKEKNAILTAVAQN QVVIISGETGCGKTTQIPQFILESVIDAARGAACSIICTQPRRISAISVSERVATERGEKLGESVGYKVRLEGIKGRETHLLFCTTGILLRRLLVDRSLK GVSHVIVDEIHERGMNEDFLLIVLKDLLSRRPDLRLVLMSATLDAELFSSYFNRAPILRIPGFTFPVKTHFLENILEMTGYRLTPYNQIDDYGQERAWKL NKQGPKRRKSQIASAVEDALRTADFRKYRKETRDSLSLWNPDCIGFNLIEYLLSYICENERPGAILVFLTGLDDISSLKDKLQAHTILGDPRRVLLLTCH GSMASSEQRLIFDVPPYGVRKIVLATNIAETSLTINDVVYVIECGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAE YQLPEILRTPLQSLCLQIKSLKLGSISEFLSKALQSPELLAVEKAIEYLKVIGALDKKEDLTVLGKYLTRLPVEPKLGKMLVLGAIFNCLDPISTIVAGL SFRDPFLTPLDKKDLADAAKAQFSRDYSDHMALVRAFNGWKDAERNFAGHDYCWKNFLSVQSMKAIESLRKEFFSLIRDIGLIDSNAHSNGLSHEEHFVR AVICYGLYPGVCSVVNNEKSFSLKTMEDGQVLLYSNSVNAQNSSIPYPWLVFNEKVKVNAVFLRDSTAVSDSMLLLFGGTVTKGDADGHLKMLGGYLEFF MKPAVAEMYTNLKRELDELIQMKLLNPKMSLKPHDELFSAVRLLLFEDRSDGRFLFGHQLLNLTKPPVVASTTRKPILASGGDSGPGGDNPKSQLQTLLT RAGYTAPVYKTKQLKNNQFRSTVEFNGMEVMGNPYGNKKSAEKDAAAEALLWLMGGSQTGRDYIDQMSILQKRSKKNHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	1.0	0.8934
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	2.4	0.8697
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	2.6	0.8520
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	3.0	0.8325
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	3.0	0.8695
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	4.2	0.8621
AT1G27070			5'-AMP-activated protein kinas...		Lus10013279 [exp]	6.3	0.7873
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	6.6	0.8083
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	7.1	0.8644
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	9.2	0.8173

Compare expression of checked genes

Lus10007938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.