Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25150 298 / 4e-102 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 289 / 7e-99 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 250 / 2e-83 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 242 / 3e-80 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 203 / 8e-65 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 191 / 3e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 184 / 1e-57 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 166 / 3e-50 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 164 / 1e-49 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT2G39920 70 / 7e-14 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013478 [exp] 473 / 4e-171 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 236 / 8e-78 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 230 / 2e-75 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 192 / 1e-60 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 178 / 6e-55 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 177 / 7e-55 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 144 / 1e-42 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 117 / 1e-32 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10038847 [exp] 82 / 4e-19 AT5G51260 97 / 2e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232900 [exp] 321 / 3e-111 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 257 / 8e-86 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 243 / 1e-80 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 211 / 3e-68 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 188 / 4e-59 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 182 / 1e-56 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 176 / 5e-55 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 69 / 1e-13 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10007939 pacid=23162300 polypeptide=Lus10007939 locus=Lus10007939.g ID=Lus10007939.BGIv1.0 annot-version=v1.0 ATGCCTTCTTCCTTCTCCGCACTTTCCCTTCTCTTCATCTCATTCCTCTTCTCATCATCCCTCCAAGCATCATCGGAGCTCAGCCATCTCCCTAGACCTC TGATCCTCGAACACCCACAAACCCAACAAGCCAATCTACAGTGCGACAGCTGGAGAATCGCAGGGGAGGCCAACAATTTGAATCCGTGGAAGACCGTCCC GGAAGAATGCCAGGACTACGTCAAAGGCTATGTCACCGGGAGGGGATACCTTGTCGATCTCGAAAGGGTTTCCGATGAGGCGGTGGCTTACGCCAAGGGA TTGAAGTTGGGGAATGATGACGGGATGGATGTTTGGGTGTTTGACGTTGACGAGACTTTGCTCTCCAATCTTCCTTATTATGCTCGGCGTGGATTCGGGT CAGAGGTGTTTGATGCTGTGGATTTTGACAACTGGGTGGATGAAGCAGCAGCGCCTGCTCTGGAGCCAAGCTTGAAACTTTATCACCAGCTTCTGGAGTT GGGCATCAAAATCGTTCTTCTGACTGGCCGCAGCGAGTCCCAGAGAGTCGTCACCGAGGAAAACCTGAGAGTTGCTGGTTTCTACATCTGGGATAGACTT ATCTTGAGAGGTTTAGAAGACCATGGGAAACTCGCGGCAAGGTACAAATCAGAGAAGAGAAGTTTGATGCTGGAACAAGGGTACAGGATCATCGGCAACT CGGGAGACCAATGGAGTGATTTGTTAGGATGCCCTATCTCGAACCGGTCGTTTAAGATCCCTAATCCTATGTATTTCATCTCTTGA
AA sequence Show only first row Show all	>Lus10007939 pacid=23162300 polypeptide=Lus10007939 locus=Lus10007939.g ID=Lus10007939.BGIv1.0 annot-version=v1.0 MPSSFSALSLLFISFLFSSSLQASSELSHLPRPLILEHPQTQQANLQCDSWRIAGEANNLNPWKTVPEECQDYVKGYVTGRGYLVDLERVSDEAVAYAKG LKLGNDDGMDVWVFDVDETLLSNLPYYARRGFGSEVFDAVDFDNWVDEAAAPALEPSLKLYHQLLELGIKIVLLTGRSESQRVVTEENLRVAGFYIWDRL ILRGLEDHGKLAARYKSEKRSLMLEQGYRIIGNSGDQWSDLLGCPISNRSFKIPNPMYFIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	0	1
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10035504 [exp]	1.7	0.8809
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10023292 [exp]	2.8	0.8577
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	4.2	0.8548
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	4.6	0.8723
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10030025 [exp]	5.0	0.8627
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	8.7	0.8725
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10041799 [exp]	9.9	0.8483
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	15.2	0.8630
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10034525 [exp]	18.4	0.8400
AT5G15680			ARM repeat superfamily protein...		Lus10031962 [exp]	18.5	0.8295

Compare expression of checked genes

Lus10007939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.