Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01140 498 / 6e-178 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) AT4G38970 469 / 4e-166 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G21330 459 / 2e-162 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G26530 287 / 2e-95 Aldolase superfamily protein (.1.2) AT2G36460 284 / 4e-94 Aldolase superfamily protein (.1.2) AT3G52930 279 / 3e-92 Aldolase superfamily protein (.1) AT4G26520 271 / 8e-89 Aldolase superfamily protein (.1) AT5G03690 270 / 1e-88 Aldolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035247 [exp] 508 / 0 AT2G01140 466 / 3e-165 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10031088 [exp] 469 / 4e-166 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10035473 [exp] 468 / 1e-165 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10034619 [exp] 346 / 4e-116 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10032956 [exp] 300 / 5e-100 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10014373 [exp] 290 / 4e-96 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 288 / 2e-95 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 270 / 1e-88 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1) Lus10035571 [exp] 263 / 1e-85 AT5G03690 604 / 0.0 Aldolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125900 [exp] 514 / 0 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.010G117900 [exp] 512 / 0 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.009G124100 [exp] 478 / 1e-169 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 469 / 2e-166 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 467 / 2e-165 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.001G468100 [exp] 294 / 6e-98 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 290 / 3e-96 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.018G090100 [exp] 289 / 4e-96 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 283 / 1e-93 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10007940 pacid=23162285 polypeptide=Lus10007940 locus=Lus10007940.g ID=Lus10007940.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCAGCTAGTCTCACTAAGCTCGACACCTCCTCCGCTTTTTTCAGCGGCCAGTCCTTCGCTTCCCGCCCCCTGTCTTCCTCCTCTTGCGTCT CCTTCCGCGTCCGCGCCGCCGGACACTACACCGACGAGCTCGTCAAAACCGTCGTACGTCAAACCTCTCCCCTCCCATTCCCCTCTCCGAAAACGATTGC TTTGCCTGGCCGTGGGATCCTGGCGATCGATGAATCGAACGCTACTTGCGGGAAGAGATTGGACTCCATAGGGTTGGAGATCACGGAGACCAACAGGCAG GCTTACAGGCAGCTTTTGCTGACAACTCCTGGCCTTGGTGAATACATCTCTGGCGCTATCCTGTTCGAGGAGACGCTTTACCAGTCCACTACTGATGGCA AGAAGTTTGTCGACTGCTTGGGTTTGGTTCCTTTACCAGGGTCGAACAATGAGTCCTGGTGCCAAGGATTGGATGGTTTGGCGTCGAGGAGTTCTGAATA TTACAAGCAAGGAGCTCGGTTTGCCAAGTGGAGGACAGTTGTTAGTATTCCTTGTGGTCCTTCTGCTCTTGCTGTTAAGGAAGTTGCATGGGGGCTTGCA CGATATACTGCCATTTCTCAGGATAATGGGCTTGTCCCTATAGTGGAACCAGAGATTCTGCTTGATGGGGATCATGGGATTGAAAGAACTCTGGAGGTGG CAGAGAAAGTCTGGTCAGAGGAGGTACCTCCTGCAGTTCCTGGAATCATGTTCTTGTCGGGAGGACAATTGGAGATCGAAGCGACCCTGAACCTGAACGC AATGAACCAGAGCCCCAACCCGTGGCATGTGTCGTTCTCGTACGCACGAGCATTGCAGAACAGCGTGCTCAAGACGTGGAAAGGACAGCCCGAGAACGTC GAGGCTGCACAGAAGGCGCTGCTGGTTCGCGCCAAGGCGAACTCTCTTGCTCAGCTCGGGAAGTACAGTGCTGATGGTGAGAGCGATGATGCCAAGAAAG GTATGTTCGTCAAGGGATATAATAGCTATTAA
AA sequence Show only first row Show all	>Lus10007940 pacid=23162285 polypeptide=Lus10007940 locus=Lus10007940.g ID=Lus10007940.BGIv1.0 annot-version=v1.0 MASSASLTKLDTSSAFFSGQSFASRPLSSSSCVSFRVRAAGHYTDELVKTVVRQTSPLPFPSPKTIALPGRGILAIDESNATCGKRLDSIGLEITETNRQ AYRQLLLTTPGLGEYISGAILFEETLYQSTTDGKKFVDCLGLVPLPGSNNESWCQGLDGLASRSSEYYKQGARFAKWRTVVSIPCGPSALAVKEVAWGLA RYTAISQDNGLVPIVEPEILLDGDHGIERTLEVAEKVWSEEVPPAVPGIMFLSGGQLEIEATLNLNAMNQSPNPWHVSFSYARALQNSVLKTWKGQPENV EAAQKALLVRAKANSLAQLGKYSADGESDDAKKGMFVKGYNSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10007940 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	29.2	0.8354
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	33.3	0.8346
AT4G10300			RmlC-like cupins superfamily p...		Lus10037245 [exp]	34.9	0.8331
AT3G15780			unknown protein		Lus10011492 [exp]	42.4	0.8021
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10036164 [exp]	52.4	0.8280
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10021064 [exp]	59.5	0.8245
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	80.6	0.8166
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10011984 [exp]	85.1	0.8038
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10020091 [exp]	86.0	0.8012
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	86.7	0.8141

Compare expression of checked genes

Lus10007940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.