Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47850 449 / 2e-155 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 293 / 1e-94 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 283 / 6e-91 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 264 / 4e-84 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 251 / 9e-80 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT1G04990 196 / 5e-58 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 183 / 9e-53 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G12680 125 / 4e-31 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT5G63260 112 / 9e-27 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G48195 86 / 2e-20 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013476 [exp] 745 / 0 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 493 / 3e-173 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 469 / 1e-164 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 340 / 7e-113 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 339 / 5e-112 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020196 [exp] 289 / 2e-93 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 287 / 9e-93 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 209 / 4e-62 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 196 / 7e-57 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215700 [exp] 375 / 1e-126 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.010G022500 [exp] 357 / 8e-120 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.013G086800 [exp] 287 / 1e-92 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 281 / 3e-90 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 218 / 7e-66 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 215 / 6e-65 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 110 / 4e-26 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.015G089100 [exp] 109 / 9e-26 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 109 / 1e-25 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.012G092500 [exp] 105 / 2e-24 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10007941 pacid=23162316 polypeptide=Lus10007941 locus=Lus10007941.g ID=Lus10007941.BGIv1.0 annot-version=v1.0 ATGGAGCTGTACAGTCACAACCAGTCGCAATCCGGACAGCAGACTGACTGGACTCCCGCCGGACCAGAAACTGGCCTCGAAGACTCGATGTGGAGATTAG GGCTGACGAGTAACGAACCGTATCCAGAGCGGCTTGGCGTCGCCACTTGTGTTTACTACATGCGTACTGGATTCTGTGGGTATGGTGCTCGGTGCAGATA CAATCATCCTCGTGATCGAGCTGCGGTTGAGGAAGCTGTGAGAGCAACTGGGTTGTATCCAGAACGGGCAGGGGAGCCTCAATGTCAGTTTTACTTGAAG ACTGGAACCTGTAAATTCGGTGCATCTTGCAAGTTCCACCATCCCAAGCATAGAGGTGGATCCTTGAGCAATGCTTCTCTAAATACACATGGATACCCGT TAAGACCGGGTGAAACTGAATGCTCCTACTATTTGCAAACGGGGCACTGCAAATTCGGTTTGAATTGTAAATTCCATCACCCTCAGCCAGCTGACTCAGC ATCTGCACCCCAGTTTTATCAGCAGGTGCAGTCTCCTTCTACAAACTTGAGAGTGCGACCTCCAATCCTACCCGGCTCGTATATGCAGGGTACGTACGGG CCTCCTATGTTGCTTCCTCCTGGAGTGGTACCTATTCCCGGTTGGAGCCCTTACTCGGCACCAGTAAGCCCGGTGCTTTCCCCCGGTGCACAAACTGCAA CCTCTTTATATGGAGTGACTCAACTGTCTGCTACGAGTCCCGGCCCTGCAAGACCTTATCCCTCCCTACTGTCGTTCGGTTCCCCCTCGAGGAGTAGTAC CCAGAAGGAGCCGAGATTTCCTGAGAGGCCTGGTGAACTTGAATGTCAGTACTACTTAAGGACCGGGGACTGTAAATATGGCTTGGCTTGCAGATATCAT CACCCTCATGATCGCGCTGTTCCTGTTTCGGATAGTATGCTCAACCCCCTTGGCCTTCCTTTGCGCCCGGGGACTCAACCATGCAGTTTCTACATGCAAA ACGGCTACTGCAAATTCGGCTCCACATGCAAGTTCGATCACCCGGTGGGTGGAGCCGTTGGATACACTCCACCCACCGCGGCATCTCTAATCGACATGCC GCCTGTTGCACCGTATCTAGTCGGGTCTCTACTGGCTACACTAGCCCCTTCTTCCCCTTCCTACGAGCTTAGACCCGAACTGATGTCAGCCCCCAGAAAC GCATCCAACAGTTCGGTCGGGTTGATCTTCTCGCAGACCGGATCGCTTCCTCCGTTCACCGACTTGCAGCTCTCGAGCCAGACTTCACTTCCTTCGACTT CTAGCAGAAGCACGAGACACGGTGTCGAGATGCGCCGTTCTTTCTAG
AA sequence Show only first row Show all	>Lus10007941 pacid=23162316 polypeptide=Lus10007941 locus=Lus10007941.g ID=Lus10007941.BGIv1.0 annot-version=v1.0 MELYSHNQSQSGQQTDWTPAGPETGLEDSMWRLGLTSNEPYPERLGVATCVYYMRTGFCGYGARCRYNHPRDRAAVEEAVRATGLYPERAGEPQCQFYLK TGTCKFGASCKFHHPKHRGGSLSNASLNTHGYPLRPGETECSYYLQTGHCKFGLNCKFHHPQPADSASAPQFYQQVQSPSTNLRVRPPILPGSYMQGTYG PPMLLPPGVVPIPGWSPYSAPVSPVLSPGAQTATSLYGVTQLSATSPGPARPYPSLLSFGSPSRSSTQKEPRFPERPGELECQYYLRTGDCKYGLACRYH HPHDRAVPVSDSMLNPLGLPLRPGTQPCSFYMQNGYCKFGSTCKFDHPVGGAVGYTPPTAASLIDMPPVAPYLVGSLLATLAPSSPSYELRPELMSAPRN ASNSSVGLIFSQTGSLPPFTDLQLSSQTSLPSTSSRSTRHGVEMRRSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	2.0	0.8165
AT1G64450			Glycine-rich protein family (....		Lus10023071 [exp]	3.6	0.8492
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	4.6	0.8066
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	4.9	0.8414
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	5.5	0.8408
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	6.7	0.8158
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	7.3	0.8027
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	8.9	0.8033
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	17.0	0.7901
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	17.0	0.7957

Compare expression of checked genes

Lus10007941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.