Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 288 / 7e-94 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 257 / 2e-82 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 256 / 8e-82 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013480 [exp] 749 / 0 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 514 / 0 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 513 / 0 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 304 / 7e-100 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 304 / 7e-100 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10038190 [exp] 249 / 4e-79 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10011839 [exp] 249 / 5e-79 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 248 / 6e-79 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 238 / 7e-75 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117400 [exp] 508 / 2e-180 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 430 / 7e-150 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.008G126200 [exp] 416 / 1e-144 AT1G08510 239 / 2e-75 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 295 / 2e-96 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 295 / 2e-96 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 290 / 1e-94 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 288 / 6e-94 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 280 / 4e-91 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 253 / 2e-80 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 248 / 2e-78 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10007942 pacid=23162294 polypeptide=Lus10007942 locus=Lus10007942.g ID=Lus10007942.BGIv1.0 annot-version=v1.0 ATGTCTTCAGTTTTCTCCTACAACACCACAATCTGCCTGCGTGTCCCAACGATCAGGTGCGAAGAAGTGAACAGCCGGAACAGATCAAACAATGTGAAGA TCAAGATCAACGGCGTCAAGTCGTCGTCAGTTTCAGCTTCACCATCCTACGGTGGAGGAGGAGGCACCACGATCAAGCTTGATCATCAACATGATCGTAA CAATAACATCACGGTGGTGGGGAAACAGAGCACGAGGCAGAACATACCGACGGAGAAGAAGTACGTGGACCGACACCGGCAGGGTCTCATGGTCGACGAT GGCGTAGCTTATAGGCAGACCGTCGTGGTTCGATCTTACGAGGTGGGGCCCGACAAGACCACCACCCTCGACAGCCTCCTCAACCTTCTTCAGGAAACAG CACTGAATCATGTGTGGATGTCGGGGCTACTTGGAAACGGGTTCGGGGCGACCCATGGGATGGTGAGGAACAACTTGATTTGGGTTGTTTCGAGAATGCA AGTTCAGGTCGATCATTATCCTATCTGGGGTGAGATAGTGGACATTGACACGTGGGTCGGAGCATCGGGGAAGAACGGGATGCGACGGGATTGGCTCATT CGTAGCCAGTCCACTGGCCAGGTCTTCGCCCGCGCCACTAGCACGTGGGTGATGATGAACGAGAAAACGAGGCGGTTGTCGAAAATGCCAGAGGAAGTTA GGGACGAGATATCGCCTTGGTTCATCGAGAAACAAGCCATTATCCAGCAGGATGATACCGCCGTTGAAAAAATCATCAAGTTGGACGACAATGCTAAATA TGTCAACACTAACCTCAAGCCAAGGAGGGGCGACTTGGACATGAACCAACATGTCAATAACGTCAAGTACGTCAAATGGATGCTCGAGACAATCCCGGAC GAGTTTGTCGAGGAGCACCAGCTATCGGGGATCATACTAGAGTACAGAAGAGAATGCGGGAGTTCGGACATAGTCGAGTCTCTTTGCAATCCCGATGACG AAATCATCCAAGGGATCGACATCCTTCAAAACGGATTCAGTGGCAATAACATGAACATTGGCCTTTTGAATGGCTTCACTTTGGCGGCAGAGATCATGGA AGGCAACGGCCTCATGGCCGGAAAAACCCCGAGATTCACACATTTGCTCCGAACCAAGCTGGCCGACGATAAGCAAGACTATGGAGAGATCGTAAGGGGG AAGACCACGTGGAAGAAGCGCCTCCAACTGCCGCCAATCGTCGAGGACTGA
AA sequence Show only first row Show all	>Lus10007942 pacid=23162294 polypeptide=Lus10007942 locus=Lus10007942.g ID=Lus10007942.BGIv1.0 annot-version=v1.0 MSSVFSYNTTICLRVPTIRCEEVNSRNRSNNVKIKINGVKSSSVSASPSYGGGGGTTIKLDHQHDRNNNITVVGKQSTRQNIPTEKKYVDRHRQGLMVDD GVAYRQTVVVRSYEVGPDKTTTLDSLLNLLQETALNHVWMSGLLGNGFGATHGMVRNNLIWVVSRMQVQVDHYPIWGEIVDIDTWVGASGKNGMRRDWLI RSQSTGQVFARATSTWVMMNEKTRRLSKMPEEVRDEISPWFIEKQAIIQQDDTAVEKIIKLDDNAKYVNTNLKPRRGDLDMNQHVNNVKYVKWMLETIPD EFVEEHQLSGIILEYRRECGSSDIVESLCNPDDEIIQGIDILQNGFSGNNMNIGLLNGFTLAAEIMEGNGLMAGKTPRFTHLLRTKLADDKQDYGEIVRG KTTWKKRLQLPPIVED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10007942 [exp]	0	1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	4.2	0.7877
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	5.5	0.7675
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	10.5	0.7924
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	10.6	0.7808
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	16.7	0.7454
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	17.1	0.7409
AT5G59050			unknown protein		Lus10001626 [exp]	18.8	0.7842
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	20.7	0.7420
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	22.2	0.7074
					Lus10012543 [exp]	25.1	0.7074

Compare expression of checked genes

Lus10007942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.