Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01110 362 / 5e-127 TATC, PGA2, APG2, UNE3 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013482 [exp] 398 / 3e-139 AT2G01110 441 / 2e-154 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117200 [exp] 377 / 2e-132 AT2G01110 388 / 4e-135 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00902 [flax] [poplar] TatC Sec-independent protein translocase protein (TatC)
Representative CDS sequence Show only first row Show all	>Lus10007945 pacid=23162295 polypeptide=Lus10007945 locus=Lus10007945.g ID=Lus10007945.BGIv1.0 annot-version=v1.0 ATGAGCTTATTCGATCATCTCGAAGAGCTCCGCCAGAGGCTGTTTGTCTCTGTATTAGCTGTTGGAGGTGCTATTGTAGGGTGCTTTGCTTTCTCTAAAG AACTGGTTATGATTCTTGAAGCTCCCGTCAAGACTCAAGGCGTTCGCTTTCTGCAACTCGCTCCCGGGGAGTTCTTCTTTACGACTTTGAAGGTGTCTGG ATACTGTGGCCTTCTACTGGGGAGCCCTGTGATTCTATACGAGATCATAGCGTTTGTCCTCCCGGGTTTGACAAAGGCGGAAAGAAGATTCTTGGGACCG ATTGTACTCGGGTCGTCTGTACTGTTCTACGCTGGAATTGTGTTCTCTTACTTGGTACTCACTCCAGCAGCGTTGAACTTCTTTGTGAGCTATGCTGAAG GTGCTGTTGAATCTCTGTGGTCGATTGATCAGTACTTCGAGTTCGTCCTCATCCTCATGTTCAGCACTGGCTTGTCTTTCCAGGTTCCGGTGATACAAAT TCTGCTCGGACAAGTTGGTTTGGTGTCAGGAGACCAGATGTTATCGGTCTGGAGATATGTCGTGGTTGGTGCAGTCGTTGCAGCAGCGGTACTCACACCA TCAACCGATCCTCTCACTCAGATGCTCTTAGCAGGGCCGCTGCTCGGTCTCTATCTCGGTGGTGCATGGGTGGTGAAGCTAAGTGGACGGTGA
AA sequence Show only first row Show all	>Lus10007945 pacid=23162295 polypeptide=Lus10007945 locus=Lus10007945.g ID=Lus10007945.BGIv1.0 annot-version=v1.0 MSLFDHLEELRQRLFVSVLAVGGAIVGCFAFSKELVMILEAPVKTQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTKAERRFLGP IVLGSSVLFYAGIVFSYLVLTPAALNFFVSYAEGAVESLWSIDQYFEFVLILMFSTGLSFQVPVIQILLGQVGLVSGDQMLSVWRYVVVGAVVAAAVLTP STDPLTQMLLAGPLLGLYLGGAWVVKLSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	0	1
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	3.3	0.8489
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	3.5	0.7821
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	6.9	0.7638
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	7.6	0.7903
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	8.2	0.7827
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032544 [exp]	10.2	0.7840
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10018221 [exp]	10.7	0.7493
AT5G63905			unknown protein		Lus10018677 [exp]	10.9	0.7630
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10028580 [exp]	11.8	0.7770
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	12.0	0.7826

Compare expression of checked genes

Lus10007945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.