Plant FIBer expression Database

Lus10007946 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71150 120 / 7e-33 unknown protein
AT1G22970 116 / 2e-31 unknown protein
AT1G22980 64 / 2e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021799
[exp]
199 / 3e-63 AT1G71150 363 / 5e-125 unknown protein
Lus10034613
[exp]
196 / 2e-62 AT1G71150 369 / 2e-127 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G117100
[exp]
140 / 1e-40 AT1G22970 283 / 2e-93 unknown protein
Potri.008G126400
[exp]
137 / 2e-39 AT1G22970 363 / 7e-125 unknown protein
PFAM info
Representative CDS sequence
>Lus10007946 pacid=23162334 polypeptide=Lus10007946 locus=Lus10007946.g ID=Lus10007946.BGIv1.0 annot-version=v1.0
ATGAAGGAACTGAAGCCTGAGCCAACAGAAGCAGAAAGTACGGTCCAAGAAGAAGAGGACGGTGGCTCGAGCGATGATGATGATGATCTAGGGGACAACT
TGTCCCCCGAAGAGATGAAAGTCGCAGAATTAGCAACCAAGATCGTATCCCAAACTCTCGTGTTCGTAAAGGAACTAGTCCGCACCATCGCTGGCGTGAT
CAAGCTGGAACGGTTTACAAGCGACAGTGTCAAGCTGGTGGATACTCCGGAGAAGTTACTGAAGTTGTGCAAGGGGATCAGAGAACAGATCGAGGACTTG
GGAGCTTGTCTTTACCCTCCACAGGAGTTTCCGGCCATGAAGACCGCTCTCGATAAGATATCTAGCAATGTCGACGAAGCCCAAGGAGTGGTTGAGAGTA
TGAACTGCTCTTCAGAAGCTTTCGTCGAGGGATGTAACGGTTTGAAGAGTTTGATTCATGTAATGGCGACCGAACTAGAGGAATCCATCACTAGTGATTT
AGAATCCAAATTACAGAGTATCAGAGTGAATGATATATGA
AA sequence
>Lus10007946 pacid=23162334 polypeptide=Lus10007946 locus=Lus10007946.g ID=Lus10007946.BGIv1.0 annot-version=v1.0
MKELKPEPTEAESTVQEEEDGGSSDDDDDLGDNLSPEEMKVAELATKIVSQTLVFVKELVRTIAGVIKLERFTSDSVKLVDTPEKLLKLCKGIREQIEDL
GACLYPPQEFPAMKTALDKISSNVDEAQGVVESMNCSSEAFVEGCNGLKSLIHVMATELEESITSDLESKLQSIRVNDI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71150 unknown protein Lus10007946
[exp]
0 1
AT3G28050 nodulin MtN21 /EamA-like trans... Lus10039429
[exp]
3.7 0.8874
AT1G31170 ATSRX sulfiredoxin (.1.2.3.4) Lus10038354
[exp]
4.2 0.8708
AT1G14790 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1... Lus10034391
[exp]
4.2 0.8641
AT5G41850 alpha/beta-Hydrolases superfam... Lus10021037
[exp]
6.7 0.8415
AT1G15940 Tudor/PWWP/MBT superfamily pro... Lus10030133
[exp]
7.9 0.8321
AT5G57910 unknown protein Lus10035808
[exp]
8.7 0.8215
AT2G45910 U-box domain-containing protei... Lus10014771
[exp]
10.2 0.8373
Lus10012544
[exp]
12.6 0.8501
AT1G13570 F-box/RNI-like superfamily pro... Lus10004851
[exp]
15.8 0.7851
AT1G54680 unknown protein Lus10033821
[exp]
17.7 0.8408

Lus10007946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.