Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18960 931 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT4G30190 930 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G24520 912 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G57350 910 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT1G80660 910 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G42640 906 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 905 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G62670 867 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 860 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT1G17260 751 / 0 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001631 [exp] 1058 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001437 [exp] 1035 / 0 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10013483 [exp] 973 / 0 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 938 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026944 [exp] 937 / 0 AT2G24520 1128 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10024105 [exp] 922 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10002326 [exp] 920 / 0 AT1G80660 1011 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10003259 [exp] 863 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 863 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090300 [exp] 993 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 988 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G275000 [exp] 963 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 948 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 917 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 913 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 909 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.003G179800 [exp] 903 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.012G071600 [exp] 869 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 863 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10007948 pacid=23162312 polypeptide=Lus10007948 locus=Lus10007948.g ID=Lus10007948.BGIv1.0 annot-version=v1.0 ATGGTTAATATGCTTGCTGACCCCAAGGAGGCAAGAGCGGGTATTCAAGAAGTCCATTTCCTTCCGTTCAATCCCGTGGACAAAAGAACTGCCCTCACTT ACATTGATGCTGATGGTAACTGGCACCGTGCATGTAAAGGAGCTCCTGAGCAGATTCTGGAATTGTGCAACTCCAGAGACGATTTGAGGAAGAAAGTCCA TTCTGTCATTGAAAAGTTCGCTGAACGCGGGCTTCGATCTCTAGGAGTTGCTAGACAGGTGGTTCCAGAGAAATCAAAGGAAAGTGCAGGTGGTCCCTGG GAGTTTGTCGGGTTGTTGAATCTCTTCGATCCGCCTAGACATGACAGTGCAGAAACGATTCGTCGGGCTCTTCACCTTGGTGTAAACGTCAAGATGATCA CTGGTGATCAACTCGCCATTGGTAAAGAAACTGGACGAAGACTTGGAATGGGAACTAACATGTACCCATCTGCTGCCCTTCTGGGCGAGCACAAGGATGC TAGCATCGCCTCTATTCCGGTTGAAGAATTGATCGAGAAAGCTGACGGATTCGCTGGAGTGTTCCCTGAACACAAATATGAAATAGTGAAGAAACTGCAA GAATTGAAGCACATTGTCGGCATGACTGGTGACGGTGTGAATGATGCTCCTGCTTTGAAGAAGGCAGACATTGGTATCGCAGTTGCTGATGCTACAGATG CTGCACGAAGCGCTTCTGACATTGTTCTTACCGAGCCTGGTTTGAGTGTTATTATTAGTGCTGTGCTTACTAGCAGAGCAATCTTCCAAAGGATGAAGAA TTACACTATATATGCAGTGTCCATCACAATCCGTATAGTGTTGGGTTTCATGCTTATTGCTCTCATCTGGAAGTTTGATTTCTCACCCTTCATGGTCCTG ATCATTGCCATCCTTAATGACGGTACTATCATGACAATCTCCAAGGACAGAGTGAAACCATCGCCTCTCCCTGATAGCTGGAAGCTTAAGGAGATCTTTG CAACTGGAGTCGGCCTCGGTAGTTACTTGGCATTGATGACCGTCATATTCTTCTGGATCATGCACAAGACCGACTTCTTCCCAGATAGATTTGGGGTGAG GCCAATTAAGGGCAACGAGGATGAGATGATGAGCGCTCTGTACCTGCAAGTGAGTATAGTGAGCCAGGCGCTGATTTTTGTGACAAGATCTCGCAGCTGG TCATTCCTGGAGAGGCCCGGGCTACTTCTGCTGTTCGCCTTCGGTGTTGCTCAACTGGTTGCAACATTGATAGCAGTATATGCAAACTGGGGGTTCGCAA GGATACAGGGAATCGGGTGGGGATGGGCAGGAGTCGTCTGGTTATACAGCATTGTGTTCTATTTCCCGCTCGATGTCATGAAATTCTTCATCCGTTACGT CCTCAGCGGAAAGGCCTGGACCAACATGCTAGAGAACAAGACCGCATTCACGACGAAGAAAGACTACGGGAAAGAGGAAAGGGAGGCCCAATGGGCGCTA GCACAAAGGACGCTGCACGGACTGCAGCCACCGCAGGAGAGTAGCCAAGGCGGAATCTTCAACGAGAAGAGCAGCTACCGGGAACTCACCGAGATTGCAG AGCAGGCGAAGAGAAGAGCCGAGGTCGCGAGGCTTAGGGAGCTTCTGACGCTCAAGGGCCACGTCGAGTCGGTGGTGAAACTCAAGGGGTTGGACATTGA CACCATCCAACAGCATTACACCGTGTAA
AA sequence Show only first row Show all	>Lus10007948 pacid=23162312 polypeptide=Lus10007948 locus=Lus10007948.g ID=Lus10007948.BGIv1.0 annot-version=v1.0 MVNMLADPKEARAGIQEVHFLPFNPVDKRTALTYIDADGNWHRACKGAPEQILELCNSRDDLRKKVHSVIEKFAERGLRSLGVARQVVPEKSKESAGGPW EFVGLLNLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSAALLGEHKDASIASIPVEELIEKADGFAGVFPEHKYEIVKKLQ ELKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVL IIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVGLGSYLALMTVIFFWIMHKTDFFPDRFGVRPIKGNEDEMMSALYLQVSIVSQALIFVTRSRSW SFLERPGLLLLFAFGVAQLVATLIAVYANWGFARIQGIGWGWAGVVWLYSIVFYFPLDVMKFFIRYVLSGKAWTNMLENKTAFTTKKDYGKEEREAQWAL AQRTLHGLQPPQESSQGGIFNEKSSYRELTEIAEQAKRRAEVARLRELLTLKGHVESVVKLKGLDIDTIQQHYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	0	1
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	1.0	0.9301
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	1.7	0.9287
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	2.0	0.9300
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	3.2	0.9185
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10028810 [exp]	3.5	0.9164
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	3.7	0.9093
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	4.2	0.8930
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	4.7	0.8876
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	4.9	0.9191
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	6.2	0.8766

Compare expression of checked genes

Lus10007948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.