Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30190 384 / 2e-128 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 382 / 3e-127 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT1G80660 377 / 2e-125 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G42640 373 / 6e-124 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 372 / 8e-124 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G57350 372 / 1e-123 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT5G62670 368 / 6e-122 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 366 / 2e-121 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT2G24520 351 / 7e-116 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT1G17260 342 / 5e-112 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001631 [exp] 391 / 7e-131 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10002325 [exp] 360 / 2e-126 AT2G07560 564 / 0.0 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Lus10024105 [exp] 376 / 3e-125 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026224 [exp] 372 / 4e-124 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10042445 [exp] 371 / 1e-123 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 369 / 2e-122 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001437 [exp] 365 / 2e-121 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10003259 [exp] 364 / 2e-120 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 364 / 2e-120 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165900 [exp] 382 / 2e-127 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 380 / 8e-127 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G005900 [exp] 380 / 9e-127 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 372 / 1e-123 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G112400 [exp] 369 / 1e-122 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G188600 [exp] 368 / 4e-122 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.015G066000 [exp] 367 / 2e-121 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 366 / 3e-121 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.001G161400 [exp] 358 / 2e-118 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Potri.018G006000 [exp] 353 / 2e-116 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10007949 pacid=23162287 polypeptide=Lus10007949 locus=Lus10007949.g ID=Lus10007949.BGIv1.0 annot-version=v1.0 ATGGCTGGTCTTGCCCCTAAAACCAAGGTACTTCGAGATGGTAAATGGAGTGAACAGGAAGCTGCGATTCTCGTACCAGGAGACATCATTAGCATCAAGT TGGGAGACATCGTCCCTGCTGACGCACGTCTTCTCGAAGGTGATCCGTTAAAAATTGATCAATCAGCTCTCACAGGTGAATCACTTCCAGTGACCAGGCA TCCAGGGCAGGAGGTTTTCTCCGGTTCAACTTGTAAACAGGGAGAACTCGAGGCTGTCGTTATTGCTACTGGTGTTCATACATTCTTCGGTAAGGCTGCC CATCTTGTGGACAGCACCAACCAAGTTGGACACTTCCAGCAGGTGCTCACTGCCATCGGTAACTTCTGCATCGTCTCCATAGCAATCGGAATGGTCATCG AGATCATAGTCATGTATCCGATCCAGCACCGCGAGTACAGGAAAGGAATCGATAACCTCCTTGTCCTCTTGATTGGAGGTATCCCTATTGCCATGCCTAC CGTCTTGTCTGTGACAATGGCTATTGGGTCCCACAAGCTGTCCGAACAGGGAGCCATCACTAAGCGTATGACTGCCATTGAAGAGATGGCTGGCCTGGAT GTTCTTTACAGAGATAAAAACTGTGCAGTGATAAAACCGGAACCCTGA
AA sequence Show only first row Show all	>Lus10007949 pacid=23162287 polypeptide=Lus10007949 locus=Lus10007949.g ID=Lus10007949.BGIv1.0 annot-version=v1.0 MAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRHPGQEVFSGSTCKQGELEAVVIATGVHTFFGKAA HLVDSTNQVGHFQQVLTAIGNFCIVSIAIGMVIEIIVMYPIQHREYRKGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSEQGAITKRMTAIEEMAGLD VLYRDKNCAVIKPEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	0	1
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	1.0	0.9364
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031728 [exp]	2.0	0.9261
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	2.8	0.9179
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	3.0	0.9232
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	3.5	0.8730
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	3.7	0.8806
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	4.1	0.8618
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	4.2	0.8764
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	5.5	0.8655
AT1G13900			Purple acid phosphatases super...		Lus10036895 [exp]	6.3	0.8581

Compare expression of checked genes

Lus10007949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.