Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01190 261 / 9e-77 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 167 / 1e-43 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 111 / 1e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 110 / 3e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 105 / 6e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 104 / 3e-23 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 96 / 4e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 89 / 2e-19 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G04700 91 / 2e-18 PB1 domain-containing protein tyrosine kinase (.1) AT1G79570 90 / 3e-18 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013486 [exp] 413 / 7e-139 AT2G01190 204 / 5e-59 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 148 / 2e-39 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 145 / 2e-37 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 142 / 5e-35 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 117 / 9e-30 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 122 / 2e-29 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10033570 [exp] 112 / 8e-26 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 110 / 2e-25 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 110 / 3e-25 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124700 [exp] 335 / 5e-105 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 319 / 1e-98 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 200 / 3e-55 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 123 / 8e-30 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 117 / 9e-28 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 111 / 1e-25 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 109 / 5e-25 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 100 / 1e-21 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 100 / 2e-21 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.004G095600 [exp] 97 / 5e-21 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10007952 pacid=23162279 polypeptide=Lus10007952 locus=Lus10007952.g ID=Lus10007952.BGIv1.0 annot-version=v1.0 ATGGATCTCCAGACACAGCCGGCTCCTCCTCAACCACCTCCTTCCACCGCTCCTCCTATCTCGGCACCCGTCGCGGTCTCACCTACCTCCGCCGCGGCAG GGTATCCGGATTCCGCCGATTCATCGCCTCGCTCTCGCAGCTCGTTCTACGATGAGCAGCAGCAGCATCAGCAGCACCCATCTCAGTCGTCGAAGCTGCG GCTCATGTGCTCCTACGGAGGCCGGATCGTCCCGCGCCCGCACGACAAGTCACTATGCTACGTCGGCGGGGACACCAGAATTGTCGTCGTCGACCGCAAC GCCTCGCTGTCTGGACTCTCGAGTAAGCTGTCCACCACGCTTTTGAACGGCCGTCCCTTCACGCTCAAGTACCAGCTGCCGAGCGAGGATCTGGATTCGC TTATTTCCGTAACCACCGATGAGGATTTGGACAACATGATCGACGAGTACGATCGCACCATCACATCGACTGGCAGCGTCGGCGGCGGTTCCAATTCCGC GAAGCCGTCGAGGCTGCGGCTGTTTTTGTTCCCGGTGGTGAAGCCTGATTCGTCGCAGTCGATCGGTGCGATCCTGGAGAACAGCGCTGCGAAGGATGAG TGGTTTTTGAGTGCCTTGAACGGTGCTGCTGCCGCTGGACTTTTGAATAGAGGATTCTCGGATTCCGCTTCTGTTAATTGCTTGCTCGGACTTGACGATG ATCCCAATGTTCATCCCAGCTACGGTGGAATTGGAGGTGGTAACGGCGATGGTAACGGTAATGGTGGTGGCGGTGTTAGAGATGGAGAAGGATTGAACAA AAACGCTAAGCTAGGGCAAGACTTTCACTCGGTCCCGGACTCCCCGATGATGATGGAAACGACGACTTCGTCCTTTGGATCCACTTCTTCCTCGCCTTCG TTGGCGAATTTGCCTCCGATCAGAGTGCATGTTGCTCAGGACCAACAGAAAGCTGGGATGGAAGAGCAGTTTGCTCAGATTAGCCTCGGTGGTGGTCTGC AGAAGCCAGATGAGGGGTTAATGCCAATTTCATCCCCACCACCAATGCCTGTTCCGATCACTGATGATGATAGATCCGATCAAGGGGTTCATGTAGGGTA CAGAAGGCCTCTGCCAGCTCAATCTCAGCCACAGATGCCTCCTCCACAGACACAGCAACAAAAATCTAACAGTGGTGGTGGTGGTGGTGGTGATATAGCT TCTCCTGATTCCGTTTCAAGTGATAGTAGCTTTAGCAATGGCATGAATAGACAAAAGCAGCCTGGAATCAGTCAAGAACAGGCCATGCAAGTTCCTCCTG GAGCAACCAGGGTTGTTGGTGTCACCCCTAACCTTGTTGCACCAAACAGCCGTGTTCAGGTTCAAGATTCTGGAAATCTATTGCCACCGCAATTTGAACA TCATCATCAACAGCAGCAGCAATTTGTTCAGGCTGGTGCTCAGTACATCCAGCATCACCCTTCCGGTGGAGTACCAATGCAAGCTTATTACCCCGTGTAC ACTCACCAGCAGCAGCAATTTGTTCAGGCTGGTGCTCAGTACATCCAGCATCACCCTTCCGGTGGAGTACCAATGCAAGCTTATTACCCCGTGTACACTC ACCAGCAGCAGCATCATCCGCACCAGATGGATCAACAATACCCAGTCTACTATGTCCAAACAAGACATCCCCCAGCCTACACCATGCCTGTGCAAATGCA CCAATCCAGTGCTCCTGAACATGCAAAGAACATCCCCTCTAGCCCGTCTCAACCTCCTCCCGTCAGTACTCCCGTCCCGAAACCTGAAATCCTCCCAACA GGAATGTACAGAACGACGAATGCTGCAGGAACGCCGCAGCTAGTGACATTGTCTTCTGGTCAGCTTCATCACCATCAACAGCAACAACAGCAACATCAGC AGTTTGTGGGTTATTCACAAGTTCATCATCATCCATCCCAGTCTGTGGCACCTCCTGGCAATCCGAACTATGGTTATGAGTTTGTCGATCCTAGTCATGG TCAGATGTACTACACTCAGCCACCAATGCCTTCACAGTACCAAACGATGACATCAGGTGCTGTATTATCAGAAGGTTCTGCTCAGCTTCCCACCGACCCC ATCAAGCGAACTTCATAA
AA sequence Show only first row Show all	>Lus10007952 pacid=23162279 polypeptide=Lus10007952 locus=Lus10007952.g ID=Lus10007952.BGIv1.0 annot-version=v1.0 MDLQTQPAPPQPPPSTAPPISAPVAVSPTSAAAGYPDSADSSPRSRSSFYDEQQQHQQHPSQSSKLRLMCSYGGRIVPRPHDKSLCYVGGDTRIVVVDRN ASLSGLSSKLSTTLLNGRPFTLKYQLPSEDLDSLISVTTDEDLDNMIDEYDRTITSTGSVGGGSNSAKPSRLRLFLFPVVKPDSSQSIGAILENSAAKDE WFLSALNGAAAAGLLNRGFSDSASVNCLLGLDDDPNVHPSYGGIGGGNGDGNGNGGGGVRDGEGLNKNAKLGQDFHSVPDSPMMMETTTSSFGSTSSSPS LANLPPIRVHVAQDQQKAGMEEQFAQISLGGGLQKPDEGLMPISSPPPMPVPITDDDRSDQGVHVGYRRPLPAQSQPQMPPPQTQQQKSNSGGGGGGDIA SPDSVSSDSSFSNGMNRQKQPGISQEQAMQVPPGATRVVGVTPNLVAPNSRVQVQDSGNLLPPQFEHHHQQQQQFVQAGAQYIQHHPSGGVPMQAYYPVY THQQQQFVQAGAQYIQHHPSGGVPMQAYYPVYTHQQQHHPHQMDQQYPVYYVQTRHPPAYTMPVQMHQSSAPEHAKNIPSSPSQPPPVSTPVPKPEILPT GMYRTTNAAGTPQLVTLSSGQLHHHQQQQQQHQQFVGYSQVHHHPSQSVAPPGNPNYGYEFVDPSHGQMYYTQPPMPSQYQTMTSGAVLSEGSAQLPTDP IKRTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	0	1
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	1.0	0.9326
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	4.9	0.8531
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	8.8	0.8314
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	9.7	0.7998
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	15.5	0.8411
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	16.5	0.8024
AT3G62220			Protein kinase superfamily pro...		Lus10038042 [exp]	17.3	0.8202
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	18.5	0.8328
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	19.0	0.7759
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	19.7	0.7809

Compare expression of checked genes

Lus10007952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.